Hb_000042_310

Information

Type -
Description -
Location Contig42: 263355-269780
Sequence    

Annotation

kegg
ID rcu:RCOM_1254760
description Cyclic nucleotide-gated ion channel, putative
nr
ID XP_002525760.1
description Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
swissprot
ID Q94AS9
description Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2
trembl
ID B9SIE1
description Cyclic nucleotide-gated ion channel, putative OS=Ricinus communis GN=RCOM_1254760 PE=4 SV=1
Gene Ontology
ID GO:0005623
description cyclic nucleotide-gated ion channel 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41484: 263388-269772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_310 0.0 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
2 Hb_004374_100 0.0473118225 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
3 Hb_000280_030 0.0683493052 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
4 Hb_015824_010 0.0875054581 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
5 Hb_144045_010 0.0889162816 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
6 Hb_000638_270 0.1152985898 - - -
7 Hb_000705_010 0.1199699233 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
8 Hb_008143_010 0.12509734 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
9 Hb_001508_030 0.1322089959 - - hypothetical protein VITISV_029808 [Vitis vinifera]
10 Hb_001172_150 0.13316343 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
11 Hb_000227_260 0.1346711517 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
12 Hb_015978_090 0.142111853 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
13 Hb_000027_110 0.1435661639 - - wall-associated kinase, putative [Ricinus communis]
14 Hb_003299_060 0.1447198804 - - nitrate transporter, putative [Ricinus communis]
15 Hb_006356_010 0.1467264945 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
16 Hb_001587_050 0.1491980718 - - -
17 Hb_000049_170 0.1493031869 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003536_020 0.1510797513 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
19 Hb_002276_030 0.1512254992 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
20 Hb_001300_160 0.1522953074 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000042_310 Hb_000042_310 Hb_004374_100 Hb_004374_100 Hb_000042_310--Hb_004374_100 Hb_000280_030 Hb_000280_030 Hb_000042_310--Hb_000280_030 Hb_015824_010 Hb_015824_010 Hb_000042_310--Hb_015824_010 Hb_144045_010 Hb_144045_010 Hb_000042_310--Hb_144045_010 Hb_000638_270 Hb_000638_270 Hb_000042_310--Hb_000638_270 Hb_000705_010 Hb_000705_010 Hb_000042_310--Hb_000705_010 Hb_004374_100--Hb_000280_030 Hb_004374_100--Hb_015824_010 Hb_004374_100--Hb_000638_270 Hb_004374_100--Hb_000705_010 Hb_004374_100--Hb_144045_010 Hb_000280_030--Hb_000638_270 Hb_000280_030--Hb_015824_010 Hb_000280_030--Hb_000705_010 Hb_002025_220 Hb_002025_220 Hb_000280_030--Hb_002025_220 Hb_015824_010--Hb_144045_010 Hb_000027_110 Hb_000027_110 Hb_015824_010--Hb_000027_110 Hb_000207_160 Hb_000207_160 Hb_015824_010--Hb_000207_160 Hb_003299_060 Hb_003299_060 Hb_144045_010--Hb_003299_060 Hb_144045_010--Hb_000280_030 Hb_001691_170 Hb_001691_170 Hb_144045_010--Hb_001691_170 Hb_000638_270--Hb_002025_220 Hb_003106_160 Hb_003106_160 Hb_000638_270--Hb_003106_160 Hb_000227_260 Hb_000227_260 Hb_000638_270--Hb_000227_260 Hb_063405_010 Hb_063405_010 Hb_000705_010--Hb_063405_010 Hb_080922_010 Hb_080922_010 Hb_000705_010--Hb_080922_010 Hb_000270_090 Hb_000270_090 Hb_000705_010--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_000705_010--Hb_001321_010 Hb_000697_020 Hb_000697_020 Hb_000705_010--Hb_000697_020 Hb_002010_030 Hb_002010_030 Hb_000705_010--Hb_002010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0180994 17.1649 52.6583 6.68745 0.0777838 0.0305074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.165184 0.0722112 0.0275119 12.0869 93.0949

CAGE analysis