Hb_000042_330

Information

Type -
Description -
Location Contig42: 285717-287207
Sequence    

Annotation

kegg
ID rcu:RCOM_1255010
description hypothetical protein
nr
ID XP_002525765.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIE6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1255010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41485: 285797-287217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010661_010 0.1207142949 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
3 Hb_127311_010 0.128053792 - - hypothetical protein JCGZ_07497 [Jatropha curcas]
4 Hb_001500_030 0.1287081462 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
5 Hb_013241_010 0.1297363586 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
6 Hb_000656_390 0.1369007976 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
7 Hb_023344_110 0.1381422953 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
8 Hb_004117_170 0.1406765456 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
9 Hb_003925_040 0.1406928827 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
10 Hb_002217_090 0.1411827388 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
11 Hb_002042_170 0.1447748707 - - RING/U-box superfamily protein [Theobroma cacao]
12 Hb_000077_390 0.1455332987 transcription factor TF Family: ERF hypothetical protein POPTR_0019s13330g [Populus trichocarpa]
13 Hb_002876_210 0.146538196 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
14 Hb_000815_240 0.1471750934 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
15 Hb_000035_050 0.1472632535 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
16 Hb_012107_010 0.1479012059 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
17 Hb_000152_330 0.1481572701 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
18 Hb_001699_230 0.1492762644 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
19 Hb_000417_300 0.1498001404 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
20 Hb_000951_130 0.1503803974 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000042_330 Hb_000042_330 Hb_010661_010 Hb_010661_010 Hb_000042_330--Hb_010661_010 Hb_127311_010 Hb_127311_010 Hb_000042_330--Hb_127311_010 Hb_001500_030 Hb_001500_030 Hb_000042_330--Hb_001500_030 Hb_013241_010 Hb_013241_010 Hb_000042_330--Hb_013241_010 Hb_000656_390 Hb_000656_390 Hb_000042_330--Hb_000656_390 Hb_023344_110 Hb_023344_110 Hb_000042_330--Hb_023344_110 Hb_004128_030 Hb_004128_030 Hb_010661_010--Hb_004128_030 Hb_010661_010--Hb_001500_030 Hb_010661_010--Hb_127311_010 Hb_000252_210 Hb_000252_210 Hb_010661_010--Hb_000252_210 Hb_003747_210 Hb_003747_210 Hb_010661_010--Hb_003747_210 Hb_001673_060 Hb_001673_060 Hb_010661_010--Hb_001673_060 Hb_127311_010--Hb_000252_210 Hb_001856_220 Hb_001856_220 Hb_127311_010--Hb_001856_220 Hb_002071_050 Hb_002071_050 Hb_127311_010--Hb_002071_050 Hb_127311_010--Hb_013241_010 Hb_000015_170 Hb_000015_170 Hb_127311_010--Hb_000015_170 Hb_002217_090 Hb_002217_090 Hb_001500_030--Hb_002217_090 Hb_001500_030--Hb_004128_030 Hb_000912_100 Hb_000912_100 Hb_001500_030--Hb_000912_100 Hb_002876_210 Hb_002876_210 Hb_001500_030--Hb_002876_210 Hb_001500_030--Hb_003747_210 Hb_000432_090 Hb_000432_090 Hb_013241_010--Hb_000432_090 Hb_084490_010 Hb_084490_010 Hb_013241_010--Hb_084490_010 Hb_000815_240 Hb_000815_240 Hb_013241_010--Hb_000815_240 Hb_003925_040 Hb_003925_040 Hb_013241_010--Hb_003925_040 Hb_012239_020 Hb_012239_020 Hb_013241_010--Hb_012239_020 Hb_000951_130 Hb_000951_130 Hb_000656_390--Hb_000951_130 Hb_006970_050 Hb_006970_050 Hb_000656_390--Hb_006970_050 Hb_009288_010 Hb_009288_010 Hb_000656_390--Hb_009288_010 Hb_001723_100 Hb_001723_100 Hb_000656_390--Hb_001723_100 Hb_000152_330 Hb_000152_330 Hb_000656_390--Hb_000152_330 Hb_002272_030 Hb_002272_030 Hb_000656_390--Hb_002272_030 Hb_003849_190 Hb_003849_190 Hb_023344_110--Hb_003849_190 Hb_002046_060 Hb_002046_060 Hb_023344_110--Hb_002046_060 Hb_023344_110--Hb_002217_090 Hb_023344_110--Hb_000912_100 Hb_143766_030 Hb_143766_030 Hb_023344_110--Hb_143766_030 Hb_023344_110--Hb_001500_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.9132 108.58 56.2659 88.6398 15.1548 7.32605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.9078 29.9066 48.9171 15.9745 40.3255

CAGE analysis