Hb_000043_040

Information

Type -
Description -
Location Contig43: 86791-87799
Sequence    

Annotation

kegg
ID pop:POPTR_0010s00240g
description hypothetical protein
nr
ID AAN62346.1
description CTV.19 [Citrus trifoliata]
swissprot
ID -
description -
trembl
ID Q8H6Q9
description CTV.19 OS=Poncirus trifoliata GN=CTV.19 PE=4 SV=1
Gene Ontology
ID GO:0003676
description AF506028_13CTV.19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000043_040 0.0 - - CTV.19 [Citrus trifoliata]
2 Hb_003205_040 0.0425410717 - - epoxide hydrolase, putative [Ricinus communis]
3 Hb_085793_010 0.0446775525 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
4 Hb_066206_010 0.0659332885 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000574_290 0.0822816685 - - PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas]
6 Hb_165100_010 0.1513804125 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
7 Hb_028248_010 0.2281394175 - - polyprotein [Oryza australiensis]
8 Hb_000612_050 0.2604192972 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
9 Hb_020250_020 0.272670961 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
10 Hb_007083_040 0.2880734294 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
11 Hb_139605_010 0.2912864874 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_097889_010 0.2999945372 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
13 Hb_011537_090 0.3000900646 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
14 Hb_011716_120 0.3000936477 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
15 Hb_009188_010 0.3003014639 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
16 Hb_008976_010 0.3003984549 - - -
17 Hb_000710_120 0.300426409 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
18 Hb_001309_030 0.3004449848 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_004019_100 0.3004550118 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
20 Hb_001972_020 0.3005104387 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000043_040 Hb_000043_040 Hb_003205_040 Hb_003205_040 Hb_000043_040--Hb_003205_040 Hb_085793_010 Hb_085793_010 Hb_000043_040--Hb_085793_010 Hb_066206_010 Hb_066206_010 Hb_000043_040--Hb_066206_010 Hb_000574_290 Hb_000574_290 Hb_000043_040--Hb_000574_290 Hb_165100_010 Hb_165100_010 Hb_000043_040--Hb_165100_010 Hb_028248_010 Hb_028248_010 Hb_000043_040--Hb_028248_010 Hb_003205_040--Hb_085793_010 Hb_003205_040--Hb_066206_010 Hb_003205_040--Hb_165100_010 Hb_003205_040--Hb_000574_290 Hb_003205_040--Hb_028248_010 Hb_085793_010--Hb_066206_010 Hb_085793_010--Hb_165100_010 Hb_085793_010--Hb_000574_290 Hb_085793_010--Hb_028248_010 Hb_066206_010--Hb_000574_290 Hb_066206_010--Hb_165100_010 Hb_066206_010--Hb_028248_010 Hb_000574_290--Hb_165100_010 Hb_000574_290--Hb_028248_010 Hb_165100_010--Hb_028248_010 Hb_011716_120 Hb_011716_120 Hb_028248_010--Hb_011716_120 Hb_017225_010 Hb_017225_010 Hb_028248_010--Hb_017225_010 Hb_011987_010 Hb_011987_010 Hb_028248_010--Hb_011987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.101197 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0885774 0.336323

CAGE analysis