Hb_000043_060

Information

Type -
Description -
Location Contig43: 109736-112802
Sequence    

Annotation

kegg
ID rcu:RCOM_0616890
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_012066262.1
description PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
swissprot
ID Q9LYT5
description Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1
trembl
ID A0A067L393
description Pectinesterase OS=Jatropha curcas GN=JCGZ_23829 PE=3 SV=1
Gene Ontology
ID GO:0016788
description probable pectinesterase pectinesterase inhibitor 35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42160: 109788-112913
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000043_060 0.0 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
2 Hb_002294_020 0.0559703683 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
3 Hb_000758_060 0.0601675118 - - PREDICTED: GDSL esterase/lipase At5g45960 [Jatropha curcas]
4 Hb_000015_220 0.0799501528 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
5 Hb_004197_030 0.0814668772 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
6 Hb_094074_010 0.0843074233 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
7 Hb_004113_030 0.0855028403 - - -
8 Hb_003370_040 0.0924417688 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
9 Hb_001192_020 0.0924563977 - - -
10 Hb_000088_280 0.092547276 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
11 Hb_187301_010 0.0927771966 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
12 Hb_011540_050 0.0928026873 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_025654_010 0.0929482521 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
14 Hb_020956_050 0.093317586 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
15 Hb_008021_030 0.0937725333 - - short-chain dehydrogenase, putative [Ricinus communis]
16 Hb_001140_310 0.0939376122 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
17 Hb_004528_030 0.0939383665 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
18 Hb_135174_010 0.0939427336 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
19 Hb_003653_040 0.0948617794 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
20 Hb_004466_080 0.0953977577 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000043_060 Hb_000043_060 Hb_002294_020 Hb_002294_020 Hb_000043_060--Hb_002294_020 Hb_000758_060 Hb_000758_060 Hb_000043_060--Hb_000758_060 Hb_000015_220 Hb_000015_220 Hb_000043_060--Hb_000015_220 Hb_004197_030 Hb_004197_030 Hb_000043_060--Hb_004197_030 Hb_094074_010 Hb_094074_010 Hb_000043_060--Hb_094074_010 Hb_004113_030 Hb_004113_030 Hb_000043_060--Hb_004113_030 Hb_001081_070 Hb_001081_070 Hb_002294_020--Hb_001081_070 Hb_002294_020--Hb_004113_030 Hb_002294_020--Hb_000758_060 Hb_001681_010 Hb_001681_010 Hb_002294_020--Hb_001681_010 Hb_184398_010 Hb_184398_010 Hb_002294_020--Hb_184398_010 Hb_004466_080 Hb_004466_080 Hb_000758_060--Hb_004466_080 Hb_025654_010 Hb_025654_010 Hb_000758_060--Hb_025654_010 Hb_011540_050 Hb_011540_050 Hb_000758_060--Hb_011540_050 Hb_187301_010 Hb_187301_010 Hb_000758_060--Hb_187301_010 Hb_012049_010 Hb_012049_010 Hb_000015_220--Hb_012049_010 Hb_000015_220--Hb_004197_030 Hb_000015_220--Hb_094074_010 Hb_000015_220--Hb_002294_020 Hb_002960_180 Hb_002960_180 Hb_000015_220--Hb_002960_180 Hb_000940_120 Hb_000940_120 Hb_004197_030--Hb_000940_120 Hb_002042_220 Hb_002042_220 Hb_004197_030--Hb_002042_220 Hb_004197_030--Hb_094074_010 Hb_003058_150 Hb_003058_150 Hb_004197_030--Hb_003058_150 Hb_005474_070 Hb_005474_070 Hb_004197_030--Hb_005474_070 Hb_000007_290 Hb_000007_290 Hb_004197_030--Hb_000007_290 Hb_094074_010--Hb_002960_180 Hb_094074_010--Hb_002042_220 Hb_002929_040 Hb_002929_040 Hb_094074_010--Hb_002929_040 Hb_034299_010 Hb_034299_010 Hb_094074_010--Hb_034299_010 Hb_099263_010 Hb_099263_010 Hb_094074_010--Hb_099263_010 Hb_004113_030--Hb_001681_010 Hb_004113_030--Hb_004466_080 Hb_004113_030--Hb_184398_010 Hb_004113_030--Hb_025654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.90299 33.8267 404.477 0 0.120054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1959.58

CAGE analysis