Hb_000043_080

Information

Type -
Description -
Location Contig43: 144184-144501
Sequence    

Annotation

kegg
ID rcu:RCOM_0999070
description lipid binding protein, putative
nr
ID XP_002529688.1
description lipid binding protein, putative [Ricinus communis]
swissprot
ID Q8W453
description Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1
trembl
ID B9SUL9
description Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0999070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42163: 144129-144814
cDNA
(Sanger)
(ID:Location)		 001_M08.ab1: 144129-144761 , 029_J14.ab1: 144130-144537

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000043_080 0.0 - - lipid binding protein, putative [Ricinus communis]
2 Hb_001489_030 0.0862300086 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
3 Hb_003086_200 0.0882164979 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
4 Hb_000556_200 0.1094731476 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
5 Hb_012395_070 0.1117724623 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
6 Hb_002007_230 0.1127279065 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
7 Hb_000265_010 0.1151395506 - - amino acid transporter, putative [Ricinus communis]
8 Hb_012053_030 0.1184212957 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
9 Hb_000300_570 0.1200168621 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
10 Hb_001596_040 0.1226102034 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
11 Hb_002917_030 0.1230305612 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
12 Hb_008503_020 0.1252749148 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_003031_030 0.136974921 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
14 Hb_000221_170 0.1394607543 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
15 Hb_001709_070 0.1426205702 - - carbohydrate binding protein, putative [Ricinus communis]
16 Hb_029508_030 0.1439716106 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
17 Hb_005797_030 0.1454037832 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
18 Hb_012753_200 0.1458178954 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
19 Hb_002805_150 0.1463450382 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_001864_010 0.1476483579 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000043_080 Hb_000043_080 Hb_001489_030 Hb_001489_030 Hb_000043_080--Hb_001489_030 Hb_003086_200 Hb_003086_200 Hb_000043_080--Hb_003086_200 Hb_000556_200 Hb_000556_200 Hb_000043_080--Hb_000556_200 Hb_012395_070 Hb_012395_070 Hb_000043_080--Hb_012395_070 Hb_002007_230 Hb_002007_230 Hb_000043_080--Hb_002007_230 Hb_000265_010 Hb_000265_010 Hb_000043_080--Hb_000265_010 Hb_008503_020 Hb_008503_020 Hb_001489_030--Hb_008503_020 Hb_000300_570 Hb_000300_570 Hb_001489_030--Hb_000300_570 Hb_002917_030 Hb_002917_030 Hb_001489_030--Hb_002917_030 Hb_001489_030--Hb_000265_010 Hb_012053_030 Hb_012053_030 Hb_001489_030--Hb_012053_030 Hb_003086_200--Hb_002007_230 Hb_003086_200--Hb_000265_010 Hb_005797_030 Hb_005797_030 Hb_003086_200--Hb_005797_030 Hb_003086_200--Hb_000300_570 Hb_003086_200--Hb_012053_030 Hb_000556_200--Hb_008503_020 Hb_000556_200--Hb_002007_230 Hb_000556_200--Hb_003086_200 Hb_001596_040 Hb_001596_040 Hb_000556_200--Hb_001596_040 Hb_000556_200--Hb_001489_030 Hb_002805_150 Hb_002805_150 Hb_012395_070--Hb_002805_150 Hb_012753_200 Hb_012753_200 Hb_012395_070--Hb_012753_200 Hb_012395_070--Hb_005797_030 Hb_012395_070--Hb_000265_010 Hb_001104_280 Hb_001104_280 Hb_012395_070--Hb_001104_280 Hb_004574_010 Hb_004574_010 Hb_012395_070--Hb_004574_010 Hb_002007_230--Hb_005797_030 Hb_002007_230--Hb_000300_570 Hb_001864_010 Hb_001864_010 Hb_002007_230--Hb_001864_010 Hb_002007_230--Hb_000265_010 Hb_151364_010 Hb_151364_010 Hb_002007_230--Hb_151364_010 Hb_000265_010--Hb_000300_570 Hb_000265_010--Hb_012053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.89334 289.425 28.0476 22.9646 7.14723 0.875717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.373923 355.926 17.9185

CAGE analysis