Hb_000043_100

Information

Type -
Description -
Location Contig43: 193741-196916
Sequence    

Annotation

kegg
ID tcc:TCM_010507
description hypothetical protein
nr
ID XP_012482987.1
description PREDICTED: uncharacterized protein LOC105797583 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061E6J4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000043_100 0.0 - - PREDICTED: uncharacterized protein LOC105797583 [Gossypium raimondii]
2 Hb_013253_030 0.1875344697 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
3 Hb_158235_010 0.2157835916 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
4 Hb_009572_010 0.2308276615 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
5 Hb_000329_520 0.2404672952 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
6 Hb_000367_140 0.240860831 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
7 Hb_000816_220 0.2415635962 - - PREDICTED: CBL-interacting protein kinase 18-like [Jatropha curcas]
8 Hb_004656_080 0.2421079718 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000184_030 0.2537370402 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
10 Hb_012717_030 0.255680832 - - hypothetical protein, partial [Pseudomonas fluorescens]
11 Hb_003376_240 0.2556987905 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000445_200 0.2651326344 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_001344_030 0.2677013234 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000031_200 0.2740637309 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
15 Hb_007479_030 0.2742635236 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
16 Hb_000012_440 0.2837348746 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
17 Hb_161207_010 0.2864136902 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_003336_020 0.2875360359 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
19 Hb_073490_010 0.2891433584 - - NAD(P)-linked oxidoreductase superfamily protein isoform 1 [Theobroma cacao]
20 Hb_000699_080 0.290000579 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000043_100 Hb_000043_100 Hb_013253_030 Hb_013253_030 Hb_000043_100--Hb_013253_030 Hb_158235_010 Hb_158235_010 Hb_000043_100--Hb_158235_010 Hb_009572_010 Hb_009572_010 Hb_000043_100--Hb_009572_010 Hb_000329_520 Hb_000329_520 Hb_000043_100--Hb_000329_520 Hb_000367_140 Hb_000367_140 Hb_000043_100--Hb_000367_140 Hb_000816_220 Hb_000816_220 Hb_000043_100--Hb_000816_220 Hb_013253_030--Hb_158235_010 Hb_000445_200 Hb_000445_200 Hb_013253_030--Hb_000445_200 Hb_013253_030--Hb_009572_010 Hb_013253_030--Hb_000816_220 Hb_000329_580 Hb_000329_580 Hb_013253_030--Hb_000329_580 Hb_001519_020 Hb_001519_020 Hb_158235_010--Hb_001519_020 Hb_001344_030 Hb_001344_030 Hb_158235_010--Hb_001344_030 Hb_003020_290 Hb_003020_290 Hb_158235_010--Hb_003020_290 Hb_005496_100 Hb_005496_100 Hb_158235_010--Hb_005496_100 Hb_003376_240 Hb_003376_240 Hb_009572_010--Hb_003376_240 Hb_084849_030 Hb_084849_030 Hb_009572_010--Hb_084849_030 Hb_001136_050 Hb_001136_050 Hb_009572_010--Hb_001136_050 Hb_007594_020 Hb_007594_020 Hb_009572_010--Hb_007594_020 Hb_000185_020 Hb_000185_020 Hb_009572_010--Hb_000185_020 Hb_174230_010 Hb_174230_010 Hb_009572_010--Hb_174230_010 Hb_003336_020 Hb_003336_020 Hb_000329_520--Hb_003336_020 Hb_000012_440 Hb_000012_440 Hb_000329_520--Hb_000012_440 Hb_000329_520--Hb_000816_220 Hb_012940_020 Hb_012940_020 Hb_000329_520--Hb_012940_020 Hb_000699_080 Hb_000699_080 Hb_000329_520--Hb_000699_080 Hb_001213_110 Hb_001213_110 Hb_000329_520--Hb_001213_110 Hb_000367_140--Hb_000699_080 Hb_000360_010 Hb_000360_010 Hb_000367_140--Hb_000360_010 Hb_000359_070 Hb_000359_070 Hb_000367_140--Hb_000359_070 Hb_000367_140--Hb_003336_020 Hb_003905_030 Hb_003905_030 Hb_000367_140--Hb_003905_030 Hb_156850_020 Hb_156850_020 Hb_000367_140--Hb_156850_020 Hb_159305_010 Hb_159305_010 Hb_000816_220--Hb_159305_010 Hb_000816_220--Hb_000699_080 Hb_000816_220--Hb_003336_020 Hb_000120_900 Hb_000120_900 Hb_000816_220--Hb_000120_900 Hb_007479_030 Hb_007479_030 Hb_000816_220--Hb_007479_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00930806 0.00882237 0.00811221 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.025624 0.0201608 0 0 0.169818

CAGE analysis