Hb_000044_040

Information

Type -
Description -
Location Contig44: 80198-85994
Sequence    

Annotation

kegg
ID rcu:RCOM_1584760
description Poly(rC)-binding protein, putative
nr
ID XP_012068119.1
description PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067KZE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15959 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42606: 82129-86014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000044_040 0.0 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
2 Hb_000134_270 0.0599714539 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
3 Hb_007441_130 0.0648772444 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_001268_280 0.067780089 - - conserved hypothetical protein [Ricinus communis]
5 Hb_021443_040 0.0721434141 - - acc synthase, putative [Ricinus communis]
6 Hb_001500_050 0.0725580781 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
7 Hb_004097_070 0.0726770364 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
8 Hb_002684_040 0.0744637549 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
9 Hb_001789_190 0.0778532783 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
10 Hb_000329_370 0.079183526 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
11 Hb_011609_140 0.0795177865 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
12 Hb_028308_010 0.0814718693 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
13 Hb_001369_130 0.0818695674 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
14 Hb_001143_250 0.0822082731 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
15 Hb_000318_120 0.0822454293 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
16 Hb_008024_030 0.0825070026 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
17 Hb_000462_060 0.0828652847 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
18 Hb_002732_040 0.0839573794 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
19 Hb_004920_090 0.0842747714 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000914_120 0.0851170103 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000044_040 Hb_000044_040 Hb_000134_270 Hb_000134_270 Hb_000044_040--Hb_000134_270 Hb_007441_130 Hb_007441_130 Hb_000044_040--Hb_007441_130 Hb_001268_280 Hb_001268_280 Hb_000044_040--Hb_001268_280 Hb_021443_040 Hb_021443_040 Hb_000044_040--Hb_021443_040 Hb_001500_050 Hb_001500_050 Hb_000044_040--Hb_001500_050 Hb_004097_070 Hb_004097_070 Hb_000044_040--Hb_004097_070 Hb_000318_120 Hb_000318_120 Hb_000134_270--Hb_000318_120 Hb_005289_040 Hb_005289_040 Hb_000134_270--Hb_005289_040 Hb_002889_010 Hb_002889_010 Hb_000134_270--Hb_002889_010 Hb_000665_120 Hb_000665_120 Hb_000134_270--Hb_000665_120 Hb_004020_040 Hb_004020_040 Hb_000134_270--Hb_004020_040 Hb_000008_290 Hb_000008_290 Hb_007441_130--Hb_000008_290 Hb_023480_010 Hb_023480_010 Hb_007441_130--Hb_023480_010 Hb_007441_130--Hb_004097_070 Hb_007062_020 Hb_007062_020 Hb_007441_130--Hb_007062_020 Hb_006909_070 Hb_006909_070 Hb_007441_130--Hb_006909_070 Hb_000914_120 Hb_000914_120 Hb_001268_280--Hb_000914_120 Hb_002267_140 Hb_002267_140 Hb_001268_280--Hb_002267_140 Hb_000162_030 Hb_000162_030 Hb_001268_280--Hb_000162_030 Hb_001318_070 Hb_001318_070 Hb_001268_280--Hb_001318_070 Hb_002732_040 Hb_002732_040 Hb_001268_280--Hb_002732_040 Hb_000243_210 Hb_000243_210 Hb_001268_280--Hb_000243_210 Hb_003929_110 Hb_003929_110 Hb_021443_040--Hb_003929_110 Hb_005489_020 Hb_005489_020 Hb_021443_040--Hb_005489_020 Hb_001004_060 Hb_001004_060 Hb_021443_040--Hb_001004_060 Hb_001123_260 Hb_001123_260 Hb_021443_040--Hb_001123_260 Hb_000329_370 Hb_000329_370 Hb_021443_040--Hb_000329_370 Hb_000343_250 Hb_000343_250 Hb_021443_040--Hb_000343_250 Hb_011344_160 Hb_011344_160 Hb_001500_050--Hb_011344_160 Hb_007803_060 Hb_007803_060 Hb_001500_050--Hb_007803_060 Hb_000009_090 Hb_000009_090 Hb_001500_050--Hb_000009_090 Hb_002022_060 Hb_002022_060 Hb_001500_050--Hb_002022_060 Hb_006373_010 Hb_006373_010 Hb_001500_050--Hb_006373_010 Hb_001789_190 Hb_001789_190 Hb_004097_070--Hb_001789_190 Hb_000200_380 Hb_000200_380 Hb_004097_070--Hb_000200_380 Hb_007657_010 Hb_007657_010 Hb_004097_070--Hb_007657_010 Hb_000346_060 Hb_000346_060 Hb_004097_070--Hb_000346_060 Hb_019280_030 Hb_019280_030 Hb_004097_070--Hb_019280_030 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9181 11.7929 10.8328 9.1847 12.6339 12.2933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8379 5.94837 6.98838 10.3647 12.8774

CAGE analysis