Hb_000045_050

Information

Type -
Description -
Location Contig45: 36166-41348
Sequence    

Annotation

kegg
ID rcu:RCOM_0592840
description metalloendopeptidase, putative
nr
ID XP_012087683.1
description PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
swissprot
ID Q9FFK3
description Probable zinc metalloprotease EGY2, chloroplastic OS=Arabidopsis thaliana GN=EGY2 PE=2 SV=1
trembl
ID A0A067L8M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01301 PE=4 SV=1
Gene Ontology
ID GO:0009535
description probable zinc metalloprotease chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43122: 36087-41412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_050 0.0 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
2 Hb_000061_250 0.0683445589 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
3 Hb_000108_150 0.0699646547 - - alpha/beta hydrolase, putative [Ricinus communis]
4 Hb_000544_080 0.077404047 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
5 Hb_003948_020 0.083627449 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
6 Hb_002811_250 0.0847400416 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
7 Hb_005181_120 0.0866942773 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_071079_020 0.0889933615 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_010557_010 0.0898392088 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
10 Hb_010721_020 0.092524957 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
11 Hb_000032_390 0.0977622678 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
12 Hb_000679_080 0.0995192854 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
13 Hb_000193_220 0.100290566 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
14 Hb_002411_100 0.1014124548 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
15 Hb_000803_170 0.10165448 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
16 Hb_058620_080 0.102868644 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
17 Hb_000317_180 0.1031440906 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
18 Hb_009393_130 0.1069692049 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
19 Hb_003549_140 0.1071323379 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_000264_280 0.1071465218 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000045_050 Hb_000045_050 Hb_000061_250 Hb_000061_250 Hb_000045_050--Hb_000061_250 Hb_000108_150 Hb_000108_150 Hb_000045_050--Hb_000108_150 Hb_000544_080 Hb_000544_080 Hb_000045_050--Hb_000544_080 Hb_003948_020 Hb_003948_020 Hb_000045_050--Hb_003948_020 Hb_002811_250 Hb_002811_250 Hb_000045_050--Hb_002811_250 Hb_005181_120 Hb_005181_120 Hb_000045_050--Hb_005181_120 Hb_000061_250--Hb_000108_150 Hb_000061_250--Hb_000544_080 Hb_000264_280 Hb_000264_280 Hb_000061_250--Hb_000264_280 Hb_000061_250--Hb_003948_020 Hb_000390_210 Hb_000390_210 Hb_000061_250--Hb_000390_210 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_000108_150--Hb_005181_120 Hb_000108_150--Hb_000264_280 Hb_007904_060 Hb_007904_060 Hb_000108_150--Hb_007904_060 Hb_011519_050 Hb_011519_050 Hb_000544_080--Hb_011519_050 Hb_058620_080 Hb_058620_080 Hb_000544_080--Hb_058620_080 Hb_009393_130 Hb_009393_130 Hb_000544_080--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_000544_080--Hb_005488_190 Hb_002411_100 Hb_002411_100 Hb_003948_020--Hb_002411_100 Hb_003664_030 Hb_003664_030 Hb_003948_020--Hb_003664_030 Hb_010557_010 Hb_010557_010 Hb_003948_020--Hb_010557_010 Hb_003948_020--Hb_000264_280 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_002811_250--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_002811_250--Hb_000803_170 Hb_002811_250--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080 Hb_005181_120--Hb_010098_040 Hb_000516_080 Hb_000516_080 Hb_005181_120--Hb_000516_080 Hb_005181_120--Hb_000679_080 Hb_007982_040 Hb_007982_040 Hb_005181_120--Hb_007982_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13233 3.48183 27.1632 14.7428 2.39797 3.12742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09824 2.37808 2.04451 2.21482 38.2285

CAGE analysis