Hb_000045_060

Information

Type -
Description -
Location Contig45: 45239-48285
Sequence    

Annotation

kegg
ID rcu:RCOM_0592990
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002526891.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9SLM2
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0592990 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_060 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_118014_010 0.1528918307 - - PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
3 Hb_027380_250 0.1949532373 - - Isoflavone reductase, putative [Ricinus communis]
4 Hb_007193_050 0.2024770237 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_065661_010 0.231309014 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
6 Hb_004981_010 0.2494192804 - - -
7 Hb_003717_020 0.2497287758 - - -
8 Hb_027204_010 0.2560755998 - - -
9 Hb_006040_040 0.2931471647 - - Putative mitochondrial protein [Glycine soja]
10 Hb_181402_010 0.3058368091 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
11 Hb_001021_050 0.3067044295 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_132317_010 0.3079230497 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_024468_040 0.3103965974 - - -
14 Hb_078901_020 0.3124866872 - - PREDICTED: uncharacterized protein LOC105648117 [Jatropha curcas]
15 Hb_001758_030 0.3181261911 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
16 Hb_002996_020 0.3368626044 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_005401_010 0.3473381349 - - -
18 Hb_000671_140 0.3536045241 - - hypothetical protein VITISV_003767 [Vitis vinifera]
19 Hb_003992_200 0.3564199298 - - -
20 Hb_133047_030 0.3594860056 - - nuclear acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000045_060 Hb_000045_060 Hb_118014_010 Hb_118014_010 Hb_000045_060--Hb_118014_010 Hb_027380_250 Hb_027380_250 Hb_000045_060--Hb_027380_250 Hb_007193_050 Hb_007193_050 Hb_000045_060--Hb_007193_050 Hb_065661_010 Hb_065661_010 Hb_000045_060--Hb_065661_010 Hb_004981_010 Hb_004981_010 Hb_000045_060--Hb_004981_010 Hb_003717_020 Hb_003717_020 Hb_000045_060--Hb_003717_020 Hb_118014_010--Hb_027380_250 Hb_118014_010--Hb_007193_050 Hb_118014_010--Hb_004981_010 Hb_078901_020 Hb_078901_020 Hb_118014_010--Hb_078901_020 Hb_001758_030 Hb_001758_030 Hb_118014_010--Hb_001758_030 Hb_027380_250--Hb_007193_050 Hb_132317_010 Hb_132317_010 Hb_027380_250--Hb_132317_010 Hb_027380_250--Hb_078901_020 Hb_001021_050 Hb_001021_050 Hb_027380_250--Hb_001021_050 Hb_007193_050--Hb_132317_010 Hb_024468_040 Hb_024468_040 Hb_007193_050--Hb_024468_040 Hb_133047_030 Hb_133047_030 Hb_007193_050--Hb_133047_030 Hb_027204_010 Hb_027204_010 Hb_065661_010--Hb_027204_010 Hb_002092_140 Hb_002092_140 Hb_065661_010--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_065661_010--Hb_166828_010 Hb_000640_280 Hb_000640_280 Hb_065661_010--Hb_000640_280 Hb_000002_280 Hb_000002_280 Hb_065661_010--Hb_000002_280 Hb_004981_010--Hb_003717_020 Hb_065395_020 Hb_065395_020 Hb_004981_010--Hb_065395_020 Hb_004981_010--Hb_001021_050 Hb_004981_010--Hb_001758_030 Hb_181402_010 Hb_181402_010 Hb_004981_010--Hb_181402_010 Hb_003717_020--Hb_181402_010 Hb_003717_020--Hb_065395_020 Hb_003717_020--Hb_001021_050 Hb_111985_030 Hb_111985_030 Hb_003717_020--Hb_111985_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0287435 0 0 0.00604895 0.017988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0246057

CAGE analysis