Hb_000045_070

Information

Type -
Description -
Location Contig45: 49088-51676
Sequence    

Annotation

kegg
ID rcu:RCOM_0592690
description hypothetical protein
nr
ID XP_002526881.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q946J2
description Histone-lysine N-methyltransferase SUVR1 OS=Arabidopsis thaliana GN=SUVR1 PE=2 SV=2
trembl
ID B9SLL2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0592690 PE=4 SV=1
Gene Ontology
ID GO:0018024
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43124: 49284-51390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000307_200 0.089894948 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
3 Hb_025814_010 0.0926054606 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
4 Hb_009543_030 0.1126482715 - - prefoldin subunit 1 [Jatropha curcas]
5 Hb_028900_020 0.1152909193 - - unnamed protein product [Coffea canephora]
6 Hb_005735_030 0.1170142546 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001902_050 0.1211947802 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
8 Hb_153054_010 0.1289542497 - - PREDICTED: metal tolerance protein 11-like [Populus euphratica]
9 Hb_033642_020 0.1317701227 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
10 Hb_150204_010 0.1318668071 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
11 Hb_000671_100 0.1321998546 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
12 Hb_010298_010 0.1329144641 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
13 Hb_024714_030 0.133138978 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
14 Hb_002014_080 0.1339526203 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
15 Hb_000175_070 0.1358700246 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
16 Hb_009558_020 0.1364236644 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
17 Hb_000364_150 0.1381101591 - - -
18 Hb_000849_070 0.1395887694 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
19 Hb_007193_100 0.1403018252 - - syntaxin family protein [Populus trichocarpa]
20 Hb_003434_060 0.1406797564 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000045_070 Hb_000045_070 Hb_000307_200 Hb_000307_200 Hb_000045_070--Hb_000307_200 Hb_025814_010 Hb_025814_010 Hb_000045_070--Hb_025814_010 Hb_009543_030 Hb_009543_030 Hb_000045_070--Hb_009543_030 Hb_028900_020 Hb_028900_020 Hb_000045_070--Hb_028900_020 Hb_005735_030 Hb_005735_030 Hb_000045_070--Hb_005735_030 Hb_001902_050 Hb_001902_050 Hb_000045_070--Hb_001902_050 Hb_003434_060 Hb_003434_060 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000077_050 Hb_000077_050 Hb_000307_200--Hb_000077_050 Hb_000307_200--Hb_028900_020 Hb_000390_060 Hb_000390_060 Hb_000307_200--Hb_000390_060 Hb_025814_010--Hb_000307_200 Hb_150204_010 Hb_150204_010 Hb_025814_010--Hb_150204_010 Hb_007192_080 Hb_007192_080 Hb_025814_010--Hb_007192_080 Hb_003195_060 Hb_003195_060 Hb_025814_010--Hb_003195_060 Hb_000696_350 Hb_000696_350 Hb_025814_010--Hb_000696_350 Hb_000103_140 Hb_000103_140 Hb_009543_030--Hb_000103_140 Hb_000175_070 Hb_000175_070 Hb_009543_030--Hb_000175_070 Hb_000510_090 Hb_000510_090 Hb_009543_030--Hb_000510_090 Hb_007193_100 Hb_007193_100 Hb_009543_030--Hb_007193_100 Hb_004453_150 Hb_004453_150 Hb_009543_030--Hb_004453_150 Hb_000684_230 Hb_000684_230 Hb_009543_030--Hb_000684_230 Hb_028900_020--Hb_000077_050 Hb_033642_020 Hb_033642_020 Hb_028900_020--Hb_033642_020 Hb_028900_020--Hb_003434_060 Hb_000012_090 Hb_000012_090 Hb_028900_020--Hb_000012_090 Hb_000176_110 Hb_000176_110 Hb_028900_020--Hb_000176_110 Hb_024714_030 Hb_024714_030 Hb_005735_030--Hb_024714_030 Hb_119583_010 Hb_119583_010 Hb_005735_030--Hb_119583_010 Hb_000236_300 Hb_000236_300 Hb_005735_030--Hb_000236_300 Hb_000847_070 Hb_000847_070 Hb_005735_030--Hb_000847_070 Hb_066807_010 Hb_066807_010 Hb_005735_030--Hb_066807_010 Hb_000365_360 Hb_000365_360 Hb_005735_030--Hb_000365_360 Hb_000700_090 Hb_000700_090 Hb_001902_050--Hb_000700_090 Hb_005539_290 Hb_005539_290 Hb_001902_050--Hb_005539_290 Hb_006602_020 Hb_006602_020 Hb_001902_050--Hb_006602_020 Hb_001902_050--Hb_000365_360 Hb_004735_010 Hb_004735_010 Hb_001902_050--Hb_004735_010 Hb_026048_100 Hb_026048_100 Hb_001902_050--Hb_026048_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0446 1.93884 1.83852 6.66496 19.5106 31.8442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7107 11.0762 9.31876 7.05979 1.18878

CAGE analysis