Hb_000045_080

Information

Type -
Description -
Location Contig45: 57007-61621
Sequence    

Annotation

kegg
ID rcu:RCOM_0592670
description amino acid transporter, putative
nr
ID XP_002526879.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9FEL7
description Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1
trembl
ID B9SLL0
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0592670 PE=4 SV=1
Gene Ontology
ID GO:0005768
description auxin transporter-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43125: 56997-61010 , PASA_asmbl_43126: 58738-61675 , PASA_asmbl_43128: 58725-59458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_080 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_008598_010 0.0590001132 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
3 Hb_017862_030 0.0775657414 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
4 Hb_026144_040 0.0810605902 - - -
5 Hb_000162_070 0.0847898353 - - phospholipase C, putative [Ricinus communis]
6 Hb_002151_020 0.0860806478 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
7 Hb_000384_020 0.0874593275 - - sucrose phosphate syntase, putative [Ricinus communis]
8 Hb_000069_540 0.0933852913 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
9 Hb_009771_040 0.0940705448 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
10 Hb_173107_020 0.0956889043 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
11 Hb_002902_040 0.095823115 - - PREDICTED: peroxidase 51 [Jatropha curcas]
12 Hb_001339_030 0.0959775588 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
13 Hb_144703_010 0.0997485719 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
14 Hb_002168_070 0.1006753745 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
15 Hb_014361_040 0.11289238 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_000991_080 0.113765704 - - kinase, putative [Ricinus communis]
17 Hb_001269_400 0.1171978502 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
18 Hb_002053_190 0.1181414788 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
19 Hb_000270_750 0.1220385349 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
20 Hb_007237_080 0.1223929212 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000045_080 Hb_000045_080 Hb_008598_010 Hb_008598_010 Hb_000045_080--Hb_008598_010 Hb_017862_030 Hb_017862_030 Hb_000045_080--Hb_017862_030 Hb_026144_040 Hb_026144_040 Hb_000045_080--Hb_026144_040 Hb_000162_070 Hb_000162_070 Hb_000045_080--Hb_000162_070 Hb_002151_020 Hb_002151_020 Hb_000045_080--Hb_002151_020 Hb_000384_020 Hb_000384_020 Hb_000045_080--Hb_000384_020 Hb_008598_010--Hb_026144_040 Hb_008598_010--Hb_002151_020 Hb_144703_010 Hb_144703_010 Hb_008598_010--Hb_144703_010 Hb_008598_010--Hb_000162_070 Hb_000069_540 Hb_000069_540 Hb_008598_010--Hb_000069_540 Hb_043630_030 Hb_043630_030 Hb_017862_030--Hb_043630_030 Hb_122951_010 Hb_122951_010 Hb_017862_030--Hb_122951_010 Hb_017862_030--Hb_008598_010 Hb_017862_030--Hb_002151_020 Hb_017862_030--Hb_026144_040 Hb_007237_080 Hb_007237_080 Hb_026144_040--Hb_007237_080 Hb_026144_040--Hb_000162_070 Hb_002598_020 Hb_002598_020 Hb_026144_040--Hb_002598_020 Hb_026144_040--Hb_002151_020 Hb_000162_070--Hb_007237_080 Hb_000991_080 Hb_000991_080 Hb_000162_070--Hb_000991_080 Hb_002811_110 Hb_002811_110 Hb_000162_070--Hb_002811_110 Hb_002902_040 Hb_002902_040 Hb_002151_020--Hb_002902_040 Hb_001269_400 Hb_001269_400 Hb_002151_020--Hb_001269_400 Hb_019496_040 Hb_019496_040 Hb_002151_020--Hb_019496_040 Hb_000473_100 Hb_000473_100 Hb_002151_020--Hb_000473_100 Hb_173107_020 Hb_173107_020 Hb_000384_020--Hb_173107_020 Hb_000816_150 Hb_000816_150 Hb_000384_020--Hb_000816_150 Hb_114733_010 Hb_114733_010 Hb_000384_020--Hb_114733_010 Hb_000384_020--Hb_000991_080 Hb_000384_020--Hb_000162_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.38242 23.0543 15.9005 49.2629 0.0694765 0.112651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0200249 0.0315135 0 8.43581 26.6529

CAGE analysis