Hb_000045_090

Information

Type -
Description -
Location Contig45: 70828-79421
Sequence    

Annotation

kegg
ID cic:CICLE_v10031758mg
description hypothetical protein
nr
ID XP_012087730.1
description PREDICTED: syntaxin-31 [Jatropha curcas]
swissprot
ID Q9FFK1
description Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1
trembl
ID A0A067LJI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01305 PE=3 SV=1
Gene Ontology
ID GO:0044424
description syntaxin-31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43129: 70852-79182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_090 0.0 - - PREDICTED: syntaxin-31 [Jatropha curcas]
2 Hb_002774_060 0.0548451158 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
3 Hb_009557_070 0.0581279353 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000329_030 0.0635895164 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
5 Hb_004545_060 0.0642700888 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
6 Hb_143398_010 0.0648025207 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
7 Hb_005686_060 0.0696435213 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
8 Hb_002078_150 0.0705106581 - - protein with unknown function [Ricinus communis]
9 Hb_002477_330 0.0707401505 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
10 Hb_007416_280 0.0714474925 - - conserved hypothetical protein [Ricinus communis]
11 Hb_148644_010 0.0718213439 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_004128_190 0.0747491277 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
13 Hb_010180_020 0.0758183836 - - hypothetical protein glysoja_030394 [Glycine soja]
14 Hb_010180_010 0.0777504754 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
15 Hb_002835_080 0.0778703708 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
16 Hb_003766_040 0.0781181511 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_010504_020 0.0794131677 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
18 Hb_002811_360 0.080726387 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
19 Hb_000656_040 0.0820306053 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
20 Hb_000103_560 0.0825134389 - - ADP-ribosylation factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000045_090 Hb_000045_090 Hb_002774_060 Hb_002774_060 Hb_000045_090--Hb_002774_060 Hb_009557_070 Hb_009557_070 Hb_000045_090--Hb_009557_070 Hb_000329_030 Hb_000329_030 Hb_000045_090--Hb_000329_030 Hb_004545_060 Hb_004545_060 Hb_000045_090--Hb_004545_060 Hb_143398_010 Hb_143398_010 Hb_000045_090--Hb_143398_010 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060 Hb_002774_060--Hb_000329_030 Hb_000656_040 Hb_000656_040 Hb_002774_060--Hb_000656_040 Hb_004324_310 Hb_004324_310 Hb_002774_060--Hb_004324_310 Hb_010172_080 Hb_010172_080 Hb_002774_060--Hb_010172_080 Hb_032208_090 Hb_032208_090 Hb_002774_060--Hb_032208_090 Hb_009557_070--Hb_000329_030 Hb_009557_070--Hb_143398_010 Hb_007416_280 Hb_007416_280 Hb_009557_070--Hb_007416_280 Hb_003175_010 Hb_003175_010 Hb_009557_070--Hb_003175_010 Hb_003929_250 Hb_003929_250 Hb_009557_070--Hb_003929_250 Hb_000329_030--Hb_000656_040 Hb_000329_030--Hb_143398_010 Hb_000579_140 Hb_000579_140 Hb_000329_030--Hb_000579_140 Hb_010180_020 Hb_010180_020 Hb_004545_060--Hb_010180_020 Hb_002078_150 Hb_002078_150 Hb_004545_060--Hb_002078_150 Hb_000103_560 Hb_000103_560 Hb_004545_060--Hb_000103_560 Hb_141131_010 Hb_141131_010 Hb_004545_060--Hb_141131_010 Hb_003038_030 Hb_003038_030 Hb_004545_060--Hb_003038_030 Hb_002271_020 Hb_002271_020 Hb_143398_010--Hb_002271_020 Hb_010180_010 Hb_010180_010 Hb_143398_010--Hb_010180_010 Hb_002473_130 Hb_002473_130 Hb_143398_010--Hb_002473_130 Hb_004705_100 Hb_004705_100 Hb_005686_060--Hb_004705_100 Hb_005686_060--Hb_010172_080 Hb_009773_020 Hb_009773_020 Hb_005686_060--Hb_009773_020 Hb_000510_130 Hb_000510_130 Hb_005686_060--Hb_000510_130 Hb_005686_060--Hb_002078_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6823 9.49441 10.3015 17.7915 16.4334 35.9364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6622 25.7781 23.5171 11.7513 6.80777

CAGE analysis