Hb_000045_110

Information

Type -
Description -
Location Contig45: 82206-85424
Sequence    

Annotation

kegg
ID rcu:RCOM_0526220
description receptor-kinase, putative (EC:1.3.1.74)
nr
ID XP_012090975.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
swissprot
ID O65440
description Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3
trembl
ID A0A067L8T1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01297 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_110 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
2 Hb_008931_020 0.1181800689 - - Receptor like protein 46, putative [Theobroma cacao]
3 Hb_004767_040 0.1219618243 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
4 Hb_001405_180 0.1226307422 - - zinc finger protein, putative [Ricinus communis]
5 Hb_039757_010 0.1229017197 - - -
6 Hb_000426_060 0.1238745135 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
7 Hb_002851_050 0.1254508086 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
8 Hb_000994_090 0.1271079452 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
9 Hb_022534_020 0.127330845 - - PREDICTED: uncharacterized protein LOC103422158 [Malus domestica]
10 Hb_000635_170 0.1278286774 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000426_070 0.1284324935 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
12 Hb_000592_040 0.1286904147 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001693_030 0.1303095581 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
14 Hb_000499_050 0.132197936 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_010368_040 0.1354109016 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009897_030 0.1359213184 - - -
17 Hb_011671_290 0.1406758145 transcription factor TF Family: ERF hypothetical protein JCGZ_26299 [Jatropha curcas]
18 Hb_013057_010 0.1428095769 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
19 Hb_002572_060 0.1451694889 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005588_150 0.1462522844 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000045_110 Hb_000045_110 Hb_008931_020 Hb_008931_020 Hb_000045_110--Hb_008931_020 Hb_004767_040 Hb_004767_040 Hb_000045_110--Hb_004767_040 Hb_001405_180 Hb_001405_180 Hb_000045_110--Hb_001405_180 Hb_039757_010 Hb_039757_010 Hb_000045_110--Hb_039757_010 Hb_000426_060 Hb_000426_060 Hb_000045_110--Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_000045_110--Hb_002851_050 Hb_011671_290 Hb_011671_290 Hb_008931_020--Hb_011671_290 Hb_000563_380 Hb_000563_380 Hb_008931_020--Hb_000563_380 Hb_000635_170 Hb_000635_170 Hb_008931_020--Hb_000635_170 Hb_000959_290 Hb_000959_290 Hb_008931_020--Hb_000959_290 Hb_002572_060 Hb_002572_060 Hb_008931_020--Hb_002572_060 Hb_004767_040--Hb_039757_010 Hb_004767_040--Hb_001405_180 Hb_009897_030 Hb_009897_030 Hb_004767_040--Hb_009897_030 Hb_093204_010 Hb_093204_010 Hb_004767_040--Hb_093204_010 Hb_004767_040--Hb_000426_060 Hb_004767_040--Hb_002851_050 Hb_001405_180--Hb_039757_010 Hb_001405_180--Hb_000426_060 Hb_001405_180--Hb_002851_050 Hb_000994_090 Hb_000994_090 Hb_001405_180--Hb_000994_090 Hb_000426_070 Hb_000426_070 Hb_001405_180--Hb_000426_070 Hb_000592_040 Hb_000592_040 Hb_001405_180--Hb_000592_040 Hb_039757_010--Hb_000426_060 Hb_039757_010--Hb_002851_050 Hb_039757_010--Hb_000994_090 Hb_039757_010--Hb_009897_030 Hb_039757_010--Hb_000426_070 Hb_000426_060--Hb_002851_050 Hb_000426_060--Hb_000994_090 Hb_000426_060--Hb_000426_070 Hb_000426_060--Hb_000592_040 Hb_002851_050--Hb_000994_090 Hb_002851_050--Hb_000426_070 Hb_002851_050--Hb_000592_040 Hb_000499_050 Hb_000499_050 Hb_002851_050--Hb_000499_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0127625 1.39672 0 0.156348 0 0.00591454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0045163 0.0242962

CAGE analysis