Hb_000045_130

Information

Type -
Description -
Location Contig45: 94756-98339
Sequence    

Annotation

kegg
ID vvi:100250067
description 60S acidic ribosomal protein P0
nr
ID ADR71235.1
description 60S acidic ribosomal protein P0A [Hevea brasiliensis]
swissprot
ID O04204
description 60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=1 SV=1
trembl
ID I3NMJ8
description 60S acidic ribosomal protein P0A OS=Hevea brasiliensis GN=RPP0A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s acidic ribosomal protein p0

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43130: 94749-98325 , PASA_asmbl_43131: 94749-97261 , PASA_asmbl_43132: 95775-98198
cDNA
(Sanger)
(ID:Location)		 006_C10.ab1: 94755-96842 , 028_H14.ab1: 94749-96722 , 041_M23.ab1: 95775-96523 , 042_B16.ab1: 94749-96738

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_130 0.0 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
2 Hb_000977_080 0.0605044216 - - type II inositol 5-phosphatase, putative [Ricinus communis]
3 Hb_003551_020 0.062568473 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
4 Hb_001369_650 0.065807038 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
5 Hb_000392_270 0.0723793974 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
6 Hb_005489_130 0.0752908529 - - calmodulin, putative [Ricinus communis]
7 Hb_000019_230 0.0758387474 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
8 Hb_000260_050 0.0788415545 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
9 Hb_007747_090 0.0807210627 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
10 Hb_002762_060 0.082979856 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
11 Hb_011537_010 0.0856923245 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
12 Hb_024835_030 0.0858807601 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
13 Hb_001019_090 0.0869855421 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
14 Hb_134226_010 0.0885717694 - - 40S ribosomal protein S21e, putative [Ricinus communis]
15 Hb_026198_050 0.0890457223 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
16 Hb_000847_070 0.0891799601 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
17 Hb_118977_020 0.0893161692 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
18 Hb_000866_300 0.0893874772 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
19 Hb_002307_030 0.0907974839 - - 40S ribosomal protein S15D [Hevea brasiliensis]
20 Hb_009767_120 0.0909813544 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000045_130 Hb_000045_130 Hb_000977_080 Hb_000977_080 Hb_000045_130--Hb_000977_080 Hb_003551_020 Hb_003551_020 Hb_000045_130--Hb_003551_020 Hb_001369_650 Hb_001369_650 Hb_000045_130--Hb_001369_650 Hb_000392_270 Hb_000392_270 Hb_000045_130--Hb_000392_270 Hb_005489_130 Hb_005489_130 Hb_000045_130--Hb_005489_130 Hb_000019_230 Hb_000019_230 Hb_000045_130--Hb_000019_230 Hb_000977_080--Hb_000392_270 Hb_000977_080--Hb_003551_020 Hb_004645_050 Hb_004645_050 Hb_000977_080--Hb_004645_050 Hb_000977_080--Hb_001369_650 Hb_000977_080--Hb_000019_230 Hb_003551_020--Hb_000019_230 Hb_003551_020--Hb_000392_270 Hb_003878_190 Hb_003878_190 Hb_003551_020--Hb_003878_190 Hb_000154_080 Hb_000154_080 Hb_003551_020--Hb_000154_080 Hb_001369_650--Hb_000392_270 Hb_011360_140 Hb_011360_140 Hb_001369_650--Hb_011360_140 Hb_003001_060 Hb_003001_060 Hb_001369_650--Hb_003001_060 Hb_009767_120 Hb_009767_120 Hb_001369_650--Hb_009767_120 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_000392_270--Hb_003878_190 Hb_000392_270--Hb_011360_140 Hb_010449_020 Hb_010449_020 Hb_005489_130--Hb_010449_020 Hb_003688_100 Hb_003688_100 Hb_005489_130--Hb_003688_100 Hb_004722_060 Hb_004722_060 Hb_005489_130--Hb_004722_060 Hb_000808_040 Hb_000808_040 Hb_005489_130--Hb_000808_040 Hb_159558_030 Hb_159558_030 Hb_005489_130--Hb_159558_030 Hb_003120_060 Hb_003120_060 Hb_000019_230--Hb_003120_060 Hb_003038_030 Hb_003038_030 Hb_000019_230--Hb_003038_030 Hb_000188_100 Hb_000188_100 Hb_000019_230--Hb_000188_100 Hb_004195_160 Hb_004195_160 Hb_000019_230--Hb_004195_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1118.88 446.891 208.879 252.685 1219.62 1272.06
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1030.78 1448.8 694.923 305.936 74.4916

CAGE analysis