Hb_000045_180

Information

Type -
Description -
Location Contig45: 182236-183794
Sequence    

Annotation

kegg
ID rcu:RCOM_0592140
description Aquaporin PIP1.3, putative
nr
ID AFD61600.1
description aquaporin PIP1 [Hevea brasiliensis]
swissprot
ID Q7XSQ9
description Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3
trembl
ID H9BMN4
description Aquaporin PIP1 OS=Hevea brasiliensis GN=AQP1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description aquaporin pip1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43136: 182158-183664
cDNA
(Sanger)
(ID:Location)		 020_A11.ab1: 182158-183110 , 020_D15.ab1: 182158-183131 , 051_P12.ab1: 182165-182514

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_180 0.0 - - aquaporin PIP1 [Hevea brasiliensis]
2 Hb_000077_460 0.0828106675 - - -
3 Hb_003439_090 0.0841667576 - - kinase, putative [Ricinus communis]
4 Hb_013914_020 0.0878854334 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
5 Hb_017866_020 0.0937310528 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
6 Hb_003938_010 0.0947327743 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
7 Hb_002007_140 0.0982170523 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
8 Hb_000856_240 0.1046528856 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_003430_020 0.1059885099 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
10 Hb_000255_020 0.1095135095 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
11 Hb_135811_060 0.1118676369 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
12 Hb_000407_080 0.1122851728 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
13 Hb_134017_010 0.1126663174 - - kinase, putative [Ricinus communis]
14 Hb_028207_030 0.1159789991 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
15 Hb_001838_010 0.1165321895 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
16 Hb_009581_050 0.1183451737 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
17 Hb_003556_060 0.1227866859 - - -
18 Hb_000000_060 0.1254605763 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
19 Hb_000586_100 0.134425415 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000152_250 0.1346916146 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]

Gene co-expression network

sample Hb_000045_180 Hb_000045_180 Hb_000077_460 Hb_000077_460 Hb_000045_180--Hb_000077_460 Hb_003439_090 Hb_003439_090 Hb_000045_180--Hb_003439_090 Hb_013914_020 Hb_013914_020 Hb_000045_180--Hb_013914_020 Hb_017866_020 Hb_017866_020 Hb_000045_180--Hb_017866_020 Hb_003938_010 Hb_003938_010 Hb_000045_180--Hb_003938_010 Hb_002007_140 Hb_002007_140 Hb_000045_180--Hb_002007_140 Hb_028207_030 Hb_028207_030 Hb_000077_460--Hb_028207_030 Hb_000077_460--Hb_017866_020 Hb_001283_010 Hb_001283_010 Hb_000077_460--Hb_001283_010 Hb_000077_460--Hb_013914_020 Hb_002003_020 Hb_002003_020 Hb_000077_460--Hb_002003_020 Hb_000586_100 Hb_000586_100 Hb_003439_090--Hb_000586_100 Hb_003439_090--Hb_013914_020 Hb_134017_010 Hb_134017_010 Hb_003439_090--Hb_134017_010 Hb_003430_020 Hb_003430_020 Hb_003439_090--Hb_003430_020 Hb_000407_080 Hb_000407_080 Hb_003439_090--Hb_000407_080 Hb_013914_020--Hb_000407_080 Hb_013914_020--Hb_000586_100 Hb_013914_020--Hb_017866_020 Hb_003052_120 Hb_003052_120 Hb_013914_020--Hb_003052_120 Hb_017866_020--Hb_002003_020 Hb_017866_020--Hb_002007_140 Hb_017866_020--Hb_001283_010 Hb_000856_240 Hb_000856_240 Hb_003938_010--Hb_000856_240 Hb_000255_020 Hb_000255_020 Hb_003938_010--Hb_000255_020 Hb_001073_060 Hb_001073_060 Hb_003938_010--Hb_001073_060 Hb_001838_010 Hb_001838_010 Hb_003938_010--Hb_001838_010 Hb_135811_060 Hb_135811_060 Hb_003938_010--Hb_135811_060 Hb_009581_050 Hb_009581_050 Hb_002007_140--Hb_009581_050 Hb_003807_020 Hb_003807_020 Hb_002007_140--Hb_003807_020 Hb_012753_200 Hb_012753_200 Hb_002007_140--Hb_012753_200 Hb_019229_020 Hb_019229_020 Hb_002007_140--Hb_019229_020 Hb_000335_050 Hb_000335_050 Hb_002007_140--Hb_000335_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.360575 770.53 53.9066 310.821 0.348718 0.681771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201048 0.0632594 0.294311 641.47 40.7981

CAGE analysis