Hb_000045_190

Information

Type -
Description -
Location Contig45: 186843-190328
Sequence    

Annotation

kegg
ID rcu:RCOM_0592110
description eukaryotic translation initiation factor 3f, eif3f, putative
nr
ID XP_012087805.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
swissprot
ID O04202
description Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=1 SV=1
trembl
ID A0A067L8U8
description Eukaryotic translation initiation factor 3 subunit F OS=Jatropha curcas GN=JCGZ_01317 PE=3 SV=1
Gene Ontology
ID GO:0005634
description eukaryotic translation initiation factor 3 subunit f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43139: 186811-190377 , PASA_asmbl_43140: 187919-188180
cDNA
(Sanger)
(ID:Location)		 008_A18.ab1: 186811-189650 , 011_H10.ab1: 186870-189996 , 019_K14.ab1: 186811-189647 , 026_A01.ab1: 186811-189523 , 027_P08.ab1: 186870-189720 , 045_H07.ab1: 186870-189978

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_190 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
2 Hb_000634_050 0.0661001671 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
3 Hb_000798_030 0.072796218 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
4 Hb_000120_750 0.0750143469 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
5 Hb_001153_080 0.0774948885 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
6 Hb_001045_080 0.082524343 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
7 Hb_002529_100 0.0847343195 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
8 Hb_002447_030 0.0855807992 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
9 Hb_001437_220 0.0876748466 - - Transmembrane protein, putative [Ricinus communis]
10 Hb_002781_020 0.0880646906 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
11 Hb_004108_230 0.089004557 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
12 Hb_000188_130 0.0896795807 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
13 Hb_010883_150 0.0906045371 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
14 Hb_004116_080 0.0924996715 - - ATATH9, putative [Ricinus communis]
15 Hb_001584_070 0.0928233848 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000212_260 0.0937936313 - - acyl-carrier-protein [Triadica sebifera]
17 Hb_003125_150 0.0937942767 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
18 Hb_000362_210 0.0944161721 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
19 Hb_000333_090 0.0949931616 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
20 Hb_011931_050 0.0953671339 - - fk506-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000045_190 Hb_000045_190 Hb_000634_050 Hb_000634_050 Hb_000045_190--Hb_000634_050 Hb_000798_030 Hb_000798_030 Hb_000045_190--Hb_000798_030 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_001153_080 Hb_001153_080 Hb_000045_190--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000045_190--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000045_190--Hb_002529_100 Hb_000417_110 Hb_000417_110 Hb_000634_050--Hb_000417_110 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000634_050--Hb_000798_030 Hb_000526_150 Hb_000526_150 Hb_000634_050--Hb_000526_150 Hb_000798_030--Hb_000417_110 Hb_070986_010 Hb_070986_010 Hb_000798_030--Hb_070986_010 Hb_007741_050 Hb_007741_050 Hb_000798_030--Hb_007741_050 Hb_004204_120 Hb_004204_120 Hb_000798_030--Hb_004204_120 Hb_004108_230 Hb_004108_230 Hb_000120_750--Hb_004108_230 Hb_004837_140 Hb_004837_140 Hb_000120_750--Hb_004837_140 Hb_007479_020 Hb_007479_020 Hb_000120_750--Hb_007479_020 Hb_001383_060 Hb_001383_060 Hb_000120_750--Hb_001383_060 Hb_000317_340 Hb_000317_340 Hb_000120_750--Hb_000317_340 Hb_000120_750--Hb_004204_120 Hb_000161_050 Hb_000161_050 Hb_001153_080--Hb_000161_050 Hb_001341_130 Hb_001341_130 Hb_001153_080--Hb_001341_130 Hb_001153_080--Hb_000634_050 Hb_011609_180 Hb_011609_180 Hb_001153_080--Hb_011609_180 Hb_000188_130 Hb_000188_130 Hb_001153_080--Hb_000188_130 Hb_003125_150 Hb_003125_150 Hb_001045_080--Hb_003125_150 Hb_009851_100 Hb_009851_100 Hb_001045_080--Hb_009851_100 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_000312_090 Hb_000312_090 Hb_001045_080--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_001045_080--Hb_001269_270 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
142.307 23.4556 38.6118 38.4316 76.2463 115.002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
279.4 247.286 117.174 51.5014 21.4091

CAGE analysis