Hb_000045_230

Information

Type -
Description -
Location Contig45: 218659-220119
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06520g
description POPTRDRAFT_1084572; transferase family protein
nr
ID XP_012087852.1
description PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
swissprot
ID Q9SND9
description Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=3 SV=1
trembl
ID A0A067L8P7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01321 PE=4 SV=1
Gene Ontology
ID GO:0047672
description uncharacterized acetyltransferase at3g50280-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43142: 218534-220148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_230 0.0 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
2 Hb_003057_080 0.0939763356 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
3 Hb_000019_220 0.0998369267 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
4 Hb_004037_010 0.1042071284 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
5 Hb_011283_010 0.1098193015 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
6 Hb_001699_240 0.1159427375 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
7 Hb_001165_040 0.1170309024 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
8 Hb_000120_440 0.1175933598 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009545_040 0.1178918372 - - conserved hypothetical protein [Ricinus communis]
10 Hb_025490_030 0.120943675 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
11 Hb_000021_090 0.1245486165 - - -
12 Hb_002818_080 0.1246628351 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
13 Hb_001930_060 0.1296986407 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
14 Hb_006153_190 0.1305419743 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
15 Hb_002805_230 0.1316717592 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
16 Hb_007532_050 0.1317379127 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
17 Hb_004693_010 0.1331404633 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
18 Hb_007527_020 0.1344669147 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
19 Hb_166232_010 0.1364664991 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
20 Hb_005356_010 0.1370528467 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]

Gene co-expression network

sample Hb_000045_230 Hb_000045_230 Hb_003057_080 Hb_003057_080 Hb_000045_230--Hb_003057_080 Hb_000019_220 Hb_000019_220 Hb_000045_230--Hb_000019_220 Hb_004037_010 Hb_004037_010 Hb_000045_230--Hb_004037_010 Hb_011283_010 Hb_011283_010 Hb_000045_230--Hb_011283_010 Hb_001699_240 Hb_001699_240 Hb_000045_230--Hb_001699_240 Hb_001165_040 Hb_001165_040 Hb_000045_230--Hb_001165_040 Hb_002311_240 Hb_002311_240 Hb_003057_080--Hb_002311_240 Hb_003057_080--Hb_000019_220 Hb_000347_550 Hb_000347_550 Hb_003057_080--Hb_000347_550 Hb_080225_010 Hb_080225_010 Hb_003057_080--Hb_080225_010 Hb_003057_080--Hb_011283_010 Hb_005000_310 Hb_005000_310 Hb_000019_220--Hb_005000_310 Hb_000019_220--Hb_002311_240 Hb_010647_010 Hb_010647_010 Hb_000019_220--Hb_010647_010 Hb_002818_080 Hb_002818_080 Hb_000019_220--Hb_002818_080 Hb_009545_040 Hb_009545_040 Hb_004037_010--Hb_009545_040 Hb_000120_440 Hb_000120_440 Hb_004037_010--Hb_000120_440 Hb_000021_090 Hb_000021_090 Hb_004037_010--Hb_000021_090 Hb_025490_030 Hb_025490_030 Hb_004037_010--Hb_025490_030 Hb_004037_010--Hb_001165_040 Hb_000076_200 Hb_000076_200 Hb_004037_010--Hb_000076_200 Hb_045992_010 Hb_045992_010 Hb_011283_010--Hb_045992_010 Hb_011283_010--Hb_000120_440 Hb_000005_270 Hb_000005_270 Hb_011283_010--Hb_000005_270 Hb_011283_010--Hb_009545_040 Hb_011283_010--Hb_001165_040 Hb_001699_240--Hb_002818_080 Hb_002805_230 Hb_002805_230 Hb_001699_240--Hb_002805_230 Hb_005614_040 Hb_005614_040 Hb_001699_240--Hb_005614_040 Hb_000503_040 Hb_000503_040 Hb_001699_240--Hb_000503_040 Hb_007483_040 Hb_007483_040 Hb_001699_240--Hb_007483_040 Hb_000712_070 Hb_000712_070 Hb_001699_240--Hb_000712_070 Hb_001165_040--Hb_009545_040 Hb_001165_040--Hb_000120_440 Hb_002835_030 Hb_002835_030 Hb_001165_040--Hb_002835_030 Hb_000462_100 Hb_000462_100 Hb_001165_040--Hb_000462_100 Hb_010839_040 Hb_010839_040 Hb_001165_040--Hb_010839_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.60894 0.106326 1.91684 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0321926 0.557182 0.0475344 28.1749 0.10585

CAGE analysis