Hb_000045_250

Information

Type -
Description -
Location Contig45: 259654-260256
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19970g
description hypothetical protein
nr
ID XP_012087833.1
description PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5G276
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19970g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43143: 259338-260499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_250 0.0 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
2 Hb_012251_010 0.0688992751 - - -
3 Hb_000203_020 0.0899412457 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
4 Hb_000134_070 0.0915581051 - - 60S ribosomal protein L6, putative [Ricinus communis]
5 Hb_003226_210 0.0918726065 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
6 Hb_007416_020 0.0931549143 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
7 Hb_001882_070 0.093634633 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
8 Hb_000283_110 0.1007869101 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
9 Hb_174865_010 0.1023641154 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
10 Hb_004007_180 0.1032452444 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
11 Hb_026398_010 0.1046275508 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
12 Hb_001221_310 0.1049017587 - - sec61 gamma subunit, putative [Ricinus communis]
13 Hb_000997_120 0.1052669834 - - 40S ribosomal protein S15E [Hevea brasiliensis]
14 Hb_003893_050 0.1063154322 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
15 Hb_006452_040 0.1065462974 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
16 Hb_004125_110 0.1084704693 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
17 Hb_003018_050 0.109661425 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
18 Hb_000915_120 0.1098498911 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
19 Hb_001155_040 0.110239723 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
20 Hb_000948_220 0.1105468986 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]

Gene co-expression network

sample Hb_000045_250 Hb_000045_250 Hb_012251_010 Hb_012251_010 Hb_000045_250--Hb_012251_010 Hb_000203_020 Hb_000203_020 Hb_000045_250--Hb_000203_020 Hb_000134_070 Hb_000134_070 Hb_000045_250--Hb_000134_070 Hb_003226_210 Hb_003226_210 Hb_000045_250--Hb_003226_210 Hb_007416_020 Hb_007416_020 Hb_000045_250--Hb_007416_020 Hb_001882_070 Hb_001882_070 Hb_000045_250--Hb_001882_070 Hb_012251_010--Hb_000203_020 Hb_174865_010 Hb_174865_010 Hb_012251_010--Hb_174865_010 Hb_000948_220 Hb_000948_220 Hb_012251_010--Hb_000948_220 Hb_000915_120 Hb_000915_120 Hb_012251_010--Hb_000915_120 Hb_000042_260 Hb_000042_260 Hb_012251_010--Hb_000042_260 Hb_000203_020--Hb_000915_120 Hb_007120_090 Hb_007120_090 Hb_000203_020--Hb_007120_090 Hb_000203_020--Hb_000042_260 Hb_002006_130 Hb_002006_130 Hb_000203_020--Hb_002006_130 Hb_000136_170 Hb_000136_170 Hb_000134_070--Hb_000136_170 Hb_002660_030 Hb_002660_030 Hb_000134_070--Hb_002660_030 Hb_000134_070--Hb_003226_210 Hb_004157_030 Hb_004157_030 Hb_000134_070--Hb_004157_030 Hb_086639_090 Hb_086639_090 Hb_000134_070--Hb_086639_090 Hb_001505_020 Hb_001505_020 Hb_000134_070--Hb_001505_020 Hb_001214_160 Hb_001214_160 Hb_003226_210--Hb_001214_160 Hb_000283_110 Hb_000283_110 Hb_003226_210--Hb_000283_110 Hb_006816_530 Hb_006816_530 Hb_003226_210--Hb_006816_530 Hb_003226_210--Hb_002660_030 Hb_000363_480 Hb_000363_480 Hb_003226_210--Hb_000363_480 Hb_002431_050 Hb_002431_050 Hb_007416_020--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_007416_020--Hb_010672_060 Hb_001080_080 Hb_001080_080 Hb_007416_020--Hb_001080_080 Hb_000365_080 Hb_000365_080 Hb_007416_020--Hb_000365_080 Hb_007416_020--Hb_003226_210 Hb_029584_060 Hb_029584_060 Hb_007416_020--Hb_029584_060 Hb_002631_020 Hb_002631_020 Hb_001882_070--Hb_002631_020 Hb_006452_040 Hb_006452_040 Hb_001882_070--Hb_006452_040 Hb_003018_050 Hb_003018_050 Hb_001882_070--Hb_003018_050 Hb_001882_070--Hb_007416_020 Hb_000441_190 Hb_000441_190 Hb_001882_070--Hb_000441_190 Hb_001882_070--Hb_000283_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.71503 1.87424 2.25201 7.15337 2.35514 6.36812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9251 22.3715 5.51492 3.00342 3.50901

CAGE analysis