Hb_000045_290

Information

Type -
Description -
Location Contig45: 273782-274328
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43148: 273936-274205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_290 0.0 - - -
2 Hb_004241_140 0.0247995343 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
3 Hb_001398_110 0.0312296475 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
4 Hb_001117_020 0.047102835 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
5 Hb_005649_070 0.0532689923 - - conserved hypothetical protein [Ricinus communis]
6 Hb_019429_020 0.0665931524 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_008821_030 0.0778694767 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
8 Hb_000331_020 0.0819559992 - - cytochrome P450, putative [Ricinus communis]
9 Hb_004788_030 0.0930601718 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
10 Hb_055877_010 0.0939220121 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_000371_030 0.097425542 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
12 Hb_152528_010 0.0998151736 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
13 Hb_007747_070 0.1040209739 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
14 Hb_000756_030 0.1073066362 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
15 Hb_004586_050 0.1087442781 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
16 Hb_012146_010 0.1089735988 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
17 Hb_001410_040 0.1093567984 - - Protein ABIL2, putative [Ricinus communis]
18 Hb_009385_010 0.1107626138 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
19 Hb_000654_060 0.1129943552 - - hypothetical protein CICLE_v10027550mg [Citrus clementina]
20 Hb_108744_010 0.118019348 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000045_290 Hb_000045_290 Hb_004241_140 Hb_004241_140 Hb_000045_290--Hb_004241_140 Hb_001398_110 Hb_001398_110 Hb_000045_290--Hb_001398_110 Hb_001117_020 Hb_001117_020 Hb_000045_290--Hb_001117_020 Hb_005649_070 Hb_005649_070 Hb_000045_290--Hb_005649_070 Hb_019429_020 Hb_019429_020 Hb_000045_290--Hb_019429_020 Hb_008821_030 Hb_008821_030 Hb_000045_290--Hb_008821_030 Hb_004241_140--Hb_005649_070 Hb_004241_140--Hb_001398_110 Hb_004241_140--Hb_001117_020 Hb_055877_010 Hb_055877_010 Hb_004241_140--Hb_055877_010 Hb_004241_140--Hb_019429_020 Hb_001398_110--Hb_001117_020 Hb_001398_110--Hb_019429_020 Hb_000331_020 Hb_000331_020 Hb_001398_110--Hb_000331_020 Hb_001398_110--Hb_005649_070 Hb_001117_020--Hb_019429_020 Hb_001117_020--Hb_008821_030 Hb_004788_030 Hb_004788_030 Hb_001117_020--Hb_004788_030 Hb_000164_030 Hb_000164_030 Hb_005649_070--Hb_000164_030 Hb_005649_070--Hb_055877_010 Hb_048141_060 Hb_048141_060 Hb_005649_070--Hb_048141_060 Hb_019429_020--Hb_008821_030 Hb_019429_020--Hb_004788_030 Hb_006083_010 Hb_006083_010 Hb_019429_020--Hb_006083_010 Hb_008821_030--Hb_004788_030 Hb_001410_040 Hb_001410_040 Hb_008821_030--Hb_001410_040 Hb_009385_010 Hb_009385_010 Hb_008821_030--Hb_009385_010 Hb_007747_070 Hb_007747_070 Hb_008821_030--Hb_007747_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.166671 0.832787 0.329344 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis