Hb_000046_040

Information

Type -
Description -
Location Contig46: 42028-43562
Sequence    

Annotation

kegg
ID rcu:RCOM_0679100
description hypothetical protein
nr
ID XP_002516836.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RSW7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0679100 PE=4 SV=1
Gene Ontology
ID GO:0005739
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43598: 42113-43610
cDNA
(Sanger)
(ID:Location)		 014_I10.ab1: 42120-43610

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011618_050 0.0699983152 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
3 Hb_000649_230 0.0872135918 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
4 Hb_010931_070 0.0873818862 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
5 Hb_001136_070 0.0896332828 - - Transmembrane protein TPARL, putative [Ricinus communis]
6 Hb_000869_020 0.0900930713 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
7 Hb_000690_160 0.0923386045 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
8 Hb_000144_070 0.0933761865 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001501_080 0.0941862232 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
10 Hb_000136_110 0.0948223344 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
11 Hb_005144_090 0.0954510474 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
12 Hb_002498_140 0.0954904905 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
13 Hb_016467_010 0.0955706181 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
14 Hb_000751_030 0.0978688774 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
15 Hb_000808_050 0.0985048236 - - exonuclease, putative [Ricinus communis]
16 Hb_002304_150 0.0996998127 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
17 Hb_000058_130 0.1011365586 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
18 Hb_000088_190 0.1015310665 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001723_150 0.1022821223 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
20 Hb_003531_080 0.1043098388 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_040 Hb_000046_040 Hb_011618_050 Hb_011618_050 Hb_000046_040--Hb_011618_050 Hb_000649_230 Hb_000649_230 Hb_000046_040--Hb_000649_230 Hb_010931_070 Hb_010931_070 Hb_000046_040--Hb_010931_070 Hb_001136_070 Hb_001136_070 Hb_000046_040--Hb_001136_070 Hb_000869_020 Hb_000869_020 Hb_000046_040--Hb_000869_020 Hb_000690_160 Hb_000690_160 Hb_000046_040--Hb_000690_160 Hb_005144_090 Hb_005144_090 Hb_011618_050--Hb_005144_090 Hb_011618_050--Hb_000649_230 Hb_000751_030 Hb_000751_030 Hb_011618_050--Hb_000751_030 Hb_000049_140 Hb_000049_140 Hb_011618_050--Hb_000049_140 Hb_000245_220 Hb_000245_220 Hb_011618_050--Hb_000245_220 Hb_000392_230 Hb_000392_230 Hb_000649_230--Hb_000392_230 Hb_010315_060 Hb_010315_060 Hb_000649_230--Hb_010315_060 Hb_027428_010 Hb_027428_010 Hb_000649_230--Hb_027428_010 Hb_073973_130 Hb_073973_130 Hb_000649_230--Hb_073973_130 Hb_022132_050 Hb_022132_050 Hb_000649_230--Hb_022132_050 Hb_003213_010 Hb_003213_010 Hb_000649_230--Hb_003213_010 Hb_170416_010 Hb_170416_010 Hb_010931_070--Hb_170416_010 Hb_001025_120 Hb_001025_120 Hb_010931_070--Hb_001025_120 Hb_004052_080 Hb_004052_080 Hb_010931_070--Hb_004052_080 Hb_000567_070 Hb_000567_070 Hb_010931_070--Hb_000567_070 Hb_005000_170 Hb_005000_170 Hb_010931_070--Hb_005000_170 Hb_000144_070 Hb_000144_070 Hb_010931_070--Hb_000144_070 Hb_000058_130 Hb_000058_130 Hb_001136_070--Hb_000058_130 Hb_000579_120 Hb_000579_120 Hb_001136_070--Hb_000579_120 Hb_001136_070--Hb_011618_050 Hb_001136_070--Hb_000649_230 Hb_121937_010 Hb_121937_010 Hb_001136_070--Hb_121937_010 Hb_003513_010 Hb_003513_010 Hb_000869_020--Hb_003513_010 Hb_004970_190 Hb_004970_190 Hb_000869_020--Hb_004970_190 Hb_000869_020--Hb_004052_080 Hb_003861_060 Hb_003861_060 Hb_000869_020--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_000869_020--Hb_007007_120 Hb_005588_080 Hb_005588_080 Hb_000869_020--Hb_005588_080 Hb_000866_010 Hb_000866_010 Hb_000690_160--Hb_000866_010 Hb_000753_240 Hb_000753_240 Hb_000690_160--Hb_000753_240 Hb_075751_010 Hb_075751_010 Hb_000690_160--Hb_075751_010 Hb_006817_010 Hb_006817_010 Hb_000690_160--Hb_006817_010 Hb_004440_020 Hb_004440_020 Hb_000690_160--Hb_004440_020 Hb_000768_170 Hb_000768_170 Hb_000690_160--Hb_000768_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.2871 31.185 117.363 67.951 66.6695 45.1697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.5992 63.4423 66.5493 33.6942 50.5285

CAGE analysis