Hb_000046_050

Information

Type -
Description -
Location Contig46: 44433-54105
Sequence    

Annotation

kegg
ID rcu:RCOM_0679110
description LEC14B protein, putative
nr
ID XP_012069446.1
description PREDICTED: LEC14B homolog [Jatropha curcas]
swissprot
ID O24467
description LEC14B homolog OS=Prunus armeniaca PE=2 SV=1
trembl
ID A0A067L6B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02048 PE=4 SV=1
Gene Ontology
ID GO:0080008
description lec14b homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43600: 45542-49555 , PASA_asmbl_43601: 52641-53248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_050 0.0 - - PREDICTED: LEC14B homolog [Jatropha curcas]
2 Hb_004324_270 0.0687627312 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
3 Hb_012675_050 0.0730312225 - - conserved hypothetical protein [Ricinus communis]
4 Hb_032264_070 0.0784877287 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
5 Hb_003540_240 0.0792245422 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
6 Hb_000061_210 0.0829062706 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
7 Hb_000107_160 0.0858618982 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
8 Hb_103118_010 0.0866945475 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
9 Hb_026549_040 0.088038912 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
10 Hb_000614_220 0.0905949008 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
11 Hb_002408_020 0.0923215079 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
12 Hb_005446_010 0.0949836625 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
13 Hb_011457_050 0.0965585556 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
14 Hb_007304_090 0.0987365702 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
15 Hb_002056_050 0.1004570554 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
16 Hb_001860_050 0.1016435373 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
17 Hb_082609_010 0.1022021244 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
18 Hb_001828_060 0.1023502726 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
19 Hb_000614_160 0.1028810193 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
20 Hb_000384_100 0.1030241077 - - hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000046_050 Hb_000046_050 Hb_004324_270 Hb_004324_270 Hb_000046_050--Hb_004324_270 Hb_012675_050 Hb_012675_050 Hb_000046_050--Hb_012675_050 Hb_032264_070 Hb_032264_070 Hb_000046_050--Hb_032264_070 Hb_003540_240 Hb_003540_240 Hb_000046_050--Hb_003540_240 Hb_000061_210 Hb_000061_210 Hb_000046_050--Hb_000061_210 Hb_000107_160 Hb_000107_160 Hb_000046_050--Hb_000107_160 Hb_011457_050 Hb_011457_050 Hb_004324_270--Hb_011457_050 Hb_005446_010 Hb_005446_010 Hb_004324_270--Hb_005446_010 Hb_002408_020 Hb_002408_020 Hb_004324_270--Hb_002408_020 Hb_003768_030 Hb_003768_030 Hb_004324_270--Hb_003768_030 Hb_002183_060 Hb_002183_060 Hb_004324_270--Hb_002183_060 Hb_011909_100 Hb_011909_100 Hb_012675_050--Hb_011909_100 Hb_012675_050--Hb_000107_160 Hb_012675_050--Hb_000061_210 Hb_103118_010 Hb_103118_010 Hb_012675_050--Hb_103118_010 Hb_012675_050--Hb_002408_020 Hb_000329_320 Hb_000329_320 Hb_032264_070--Hb_000329_320 Hb_000656_240 Hb_000656_240 Hb_032264_070--Hb_000656_240 Hb_001268_420 Hb_001268_420 Hb_032264_070--Hb_001268_420 Hb_000985_030 Hb_000985_030 Hb_032264_070--Hb_000985_030 Hb_000614_160 Hb_000614_160 Hb_032264_070--Hb_000614_160 Hb_002056_050 Hb_002056_050 Hb_003540_240--Hb_002056_050 Hb_000441_110 Hb_000441_110 Hb_003540_240--Hb_000441_110 Hb_002235_350 Hb_002235_350 Hb_003540_240--Hb_002235_350 Hb_004127_020 Hb_004127_020 Hb_003540_240--Hb_004127_020 Hb_000169_040 Hb_000169_040 Hb_003540_240--Hb_000169_040 Hb_002798_020 Hb_002798_020 Hb_003540_240--Hb_002798_020 Hb_000061_210--Hb_103118_010 Hb_008453_030 Hb_008453_030 Hb_000061_210--Hb_008453_030 Hb_000061_210--Hb_002408_020 Hb_000421_220 Hb_000421_220 Hb_000061_210--Hb_000421_220 Hb_001049_110 Hb_001049_110 Hb_000061_210--Hb_001049_110 Hb_012423_030 Hb_012423_030 Hb_000107_160--Hb_012423_030 Hb_000107_160--Hb_008453_030 Hb_004143_150 Hb_004143_150 Hb_000107_160--Hb_004143_150 Hb_002676_090 Hb_002676_090 Hb_000107_160--Hb_002676_090 Hb_000107_160--Hb_004324_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.673 3.9066 5.39027 2.64238 5.48141 5.74543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.2349 13.9664 7.81216 5.53515 8.40748

CAGE analysis