Hb_000046_230

Information

Type -
Description -
Location Contig46: 199048-204778
Sequence    

Annotation

kegg
ID rcu:RCOM_0679520
description hypothetical protein
nr
ID XP_012069422.1
description PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02031 PE=4 SV=1
Gene Ontology
ID GO:0007275
description chromatin structure-remodeling complex protein syd-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)
-
cDNA
(Sanger)
(ID:Location)
-

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_230 0.0 - - PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
2 Hb_038190_040 0.1965162041 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
3 Hb_000740_030 0.2386325228 - - hypothetical protein VITISV_038271 [Vitis vinifera]
4 Hb_004604_020 0.2449694819 - - PREDICTED: uncharacterized protein LOC102581016 [Solanum tuberosum]
5 Hb_003581_160 0.2685114 - - -
6 Hb_002588_020 0.2807922065 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
7 Hb_011468_010 0.2909024533 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
8 Hb_000905_150 0.301015851 - - Cytochrome P450 [Theobroma cacao]
9 Hb_001863_210 0.3030310015 - - -
10 Hb_185830_100 0.3030405391 - - -
11 Hb_002708_010 0.3030590492 - - -
12 Hb_006387_010 0.3031050566 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
13 Hb_049827_010 0.3032017153 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
14 Hb_003392_010 0.3033145766 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
15 Hb_102355_010 0.3039945394 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
16 Hb_086484_010 0.3043371111 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
17 Hb_001749_030 0.3062064138 - - -
18 Hb_003637_030 0.3067663343 - - -
19 Hb_003793_020 0.3125338731 - - conserved hypothetical protein [Ricinus communis]
20 Hb_047923_020 0.3130838314 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_000046_230 Hb_000046_230 Hb_038190_040 Hb_038190_040 Hb_000046_230--Hb_038190_040 Hb_000740_030 Hb_000740_030 Hb_000046_230--Hb_000740_030 Hb_004604_020 Hb_004604_020 Hb_000046_230--Hb_004604_020 Hb_003581_160 Hb_003581_160 Hb_000046_230--Hb_003581_160 Hb_002588_020 Hb_002588_020 Hb_000046_230--Hb_002588_020 Hb_011468_010 Hb_011468_010 Hb_000046_230--Hb_011468_010 Hb_038190_040--Hb_000740_030 Hb_003392_010 Hb_003392_010 Hb_038190_040--Hb_003392_010 Hb_007943_010 Hb_007943_010 Hb_038190_040--Hb_007943_010 Hb_049827_010 Hb_049827_010 Hb_038190_040--Hb_049827_010 Hb_006387_010 Hb_006387_010 Hb_038190_040--Hb_006387_010 Hb_000740_030--Hb_004604_020 Hb_000740_030--Hb_011468_010 Hb_047923_020 Hb_047923_020 Hb_000740_030--Hb_047923_020 Hb_000740_030--Hb_002588_020 Hb_004604_020--Hb_047923_020 Hb_003793_020 Hb_003793_020 Hb_004604_020--Hb_003793_020 Hb_004041_070 Hb_004041_070 Hb_004604_020--Hb_004041_070 Hb_004044_060 Hb_004044_060 Hb_004604_020--Hb_004044_060 Hb_000009_260 Hb_000009_260 Hb_004604_020--Hb_000009_260 Hb_003581_160--Hb_002588_020 Hb_005654_020 Hb_005654_020 Hb_003581_160--Hb_005654_020 Hb_003581_160--Hb_011468_010 Hb_001491_060 Hb_001491_060 Hb_003581_160--Hb_001491_060 Hb_137914_010 Hb_137914_010 Hb_003581_160--Hb_137914_010 Hb_002588_020--Hb_137914_010 Hb_002588_020--Hb_001491_060 Hb_011344_100 Hb_011344_100 Hb_002588_020--Hb_011344_100 Hb_001269_280 Hb_001269_280 Hb_002588_020--Hb_001269_280 Hb_003117_050 Hb_003117_050 Hb_011468_010--Hb_003117_050 Hb_046198_020 Hb_046198_020 Hb_011468_010--Hb_046198_020 Hb_000796_060 Hb_000796_060 Hb_011468_010--Hb_000796_060 Hb_013394_090 Hb_013394_090 Hb_011468_010--Hb_013394_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.156373 0.00735962 0.0173474 0.177002 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0445281 0

CAGE analysis