Hb_000046_280

Information

Type -
Description -
Location Contig46: 227470-234896
Sequence    

Annotation

kegg
ID rcu:RCOM_0679680
description hypothetical protein
nr
ID XP_012069409.1
description PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KV46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02025 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43630: 231847-232239 , PASA_asmbl_43633: 232584-234806
cDNA
(Sanger)
(ID:Location)		 010_L03.ab1: 234586-234806

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_280 0.0 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
2 Hb_004440_090 0.0626171001 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
3 Hb_012725_050 0.0719339911 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
4 Hb_002214_040 0.0720276999 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
5 Hb_007576_040 0.0724192773 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
6 Hb_001703_030 0.0749447181 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
7 Hb_000392_440 0.0756454233 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
8 Hb_000529_190 0.0758898997 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
9 Hb_011689_080 0.0760430711 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
10 Hb_118707_030 0.0767837351 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
11 Hb_063716_050 0.0771109103 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
12 Hb_009838_080 0.0773761013 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
13 Hb_000926_280 0.0805749591 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
14 Hb_028227_020 0.0810794341 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
15 Hb_002391_300 0.082336228 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
16 Hb_003001_120 0.0858576821 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
17 Hb_017904_010 0.0860443462 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
18 Hb_148912_010 0.0873155982 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002477_070 0.0882700563 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
20 Hb_021443_070 0.0884083679 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_280 Hb_000046_280 Hb_004440_090 Hb_004440_090 Hb_000046_280--Hb_004440_090 Hb_012725_050 Hb_012725_050 Hb_000046_280--Hb_012725_050 Hb_002214_040 Hb_002214_040 Hb_000046_280--Hb_002214_040 Hb_007576_040 Hb_007576_040 Hb_000046_280--Hb_007576_040 Hb_001703_030 Hb_001703_030 Hb_000046_280--Hb_001703_030 Hb_000392_440 Hb_000392_440 Hb_000046_280--Hb_000392_440 Hb_003005_020 Hb_003005_020 Hb_004440_090--Hb_003005_020 Hb_002391_300 Hb_002391_300 Hb_004440_090--Hb_002391_300 Hb_063716_050 Hb_063716_050 Hb_004440_090--Hb_063716_050 Hb_000398_180 Hb_000398_180 Hb_004440_090--Hb_000398_180 Hb_007426_230 Hb_007426_230 Hb_004440_090--Hb_007426_230 Hb_001105_030 Hb_001105_030 Hb_012725_050--Hb_001105_030 Hb_001157_020 Hb_001157_020 Hb_012725_050--Hb_001157_020 Hb_001821_010 Hb_001821_010 Hb_012725_050--Hb_001821_010 Hb_028227_020 Hb_028227_020 Hb_012725_050--Hb_028227_020 Hb_012725_050--Hb_002214_040 Hb_000331_080 Hb_000331_080 Hb_012725_050--Hb_000331_080 Hb_000529_190 Hb_000529_190 Hb_002214_040--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_002214_040--Hb_000832_140 Hb_118707_030 Hb_118707_030 Hb_002214_040--Hb_118707_030 Hb_002477_070 Hb_002477_070 Hb_002214_040--Hb_002477_070 Hb_009838_080 Hb_009838_080 Hb_002214_040--Hb_009838_080 Hb_000815_040 Hb_000815_040 Hb_002214_040--Hb_000815_040 Hb_010661_030 Hb_010661_030 Hb_007576_040--Hb_010661_030 Hb_007951_060 Hb_007951_060 Hb_007576_040--Hb_007951_060 Hb_005503_030 Hb_005503_030 Hb_007576_040--Hb_005503_030 Hb_007576_040--Hb_063716_050 Hb_000327_120 Hb_000327_120 Hb_007576_040--Hb_000327_120 Hb_001512_060 Hb_001512_060 Hb_007576_040--Hb_001512_060 Hb_012799_180 Hb_012799_180 Hb_001703_030--Hb_012799_180 Hb_001703_030--Hb_009838_080 Hb_132835_010 Hb_132835_010 Hb_001703_030--Hb_132835_010 Hb_011867_010 Hb_011867_010 Hb_001703_030--Hb_011867_010 Hb_017904_010 Hb_017904_010 Hb_001703_030--Hb_017904_010 Hb_011360_140 Hb_011360_140 Hb_000392_440--Hb_011360_140 Hb_005993_040 Hb_005993_040 Hb_000392_440--Hb_005993_040 Hb_000392_440--Hb_010661_030 Hb_002928_130 Hb_002928_130 Hb_000392_440--Hb_002928_130 Hb_000015_080 Hb_000015_080 Hb_000392_440--Hb_000015_080 Hb_011571_020 Hb_011571_020 Hb_000392_440--Hb_011571_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9671 4.62284 11.4764 7.06626 22.5593 21.0884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2747 21.3444 18.6006 8.92066 9.09506

CAGE analysis