Hb_000046_290

Information

Type -
Description -
Location Contig46: 238361-239481
Sequence    

Annotation

kegg
ID dosa:Os11t0163600-01
description Os11g0163600; Similar to Tubby-like F-box protein 13.
nr
ID XP_010536311.1
description PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
swissprot
ID O80699
description Putative Tubby-like protein 4 OS=Arabidopsis thaliana GN=TULP4 PE=3 SV=1
trembl
ID M1APY9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010655 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43634: 238447-242859 , PASA_asmbl_43635: 238447-241715 , PASA_asmbl_43636: 238456-242789 , PASA_asmbl_43638: 239124-239282
cDNA
(Sanger)
(ID:Location)		 010_I15.ab1: 238456-240610 , 037_M03.ab1: 238489-240958

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_290 0.0 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
2 Hb_002471_080 0.0468641815 - - oxidoreductase, putative [Ricinus communis]
3 Hb_027625_010 0.0736489519 - - PREDICTED: protein sym-1-like [Jatropha curcas]
4 Hb_001775_110 0.0764761522 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
5 Hb_001360_050 0.0776042579 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
6 Hb_008544_010 0.077753979 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
7 Hb_001191_090 0.0810898194 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
8 Hb_001829_060 0.0813947575 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
9 Hb_009666_040 0.0825352883 - - glutathione transferase, putative [Ricinus communis]
10 Hb_009393_210 0.0835127345 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
11 Hb_124755_010 0.086074843 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
12 Hb_004724_340 0.0862261893 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
13 Hb_001083_020 0.0865254707 - - -
14 Hb_029866_020 0.086714891 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
15 Hb_005731_170 0.0875434478 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
16 Hb_114336_020 0.0882847775 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
17 Hb_001461_010 0.0884736207 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
18 Hb_000329_310 0.090072555 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
19 Hb_000976_360 0.0903013988 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
20 Hb_001235_030 0.0904635208 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]

Gene co-expression network

sample Hb_000046_290 Hb_000046_290 Hb_002471_080 Hb_002471_080 Hb_000046_290--Hb_002471_080 Hb_027625_010 Hb_027625_010 Hb_000046_290--Hb_027625_010 Hb_001775_110 Hb_001775_110 Hb_000046_290--Hb_001775_110 Hb_001360_050 Hb_001360_050 Hb_000046_290--Hb_001360_050 Hb_008544_010 Hb_008544_010 Hb_000046_290--Hb_008544_010 Hb_001191_090 Hb_001191_090 Hb_000046_290--Hb_001191_090 Hb_002471_080--Hb_001360_050 Hb_001829_060 Hb_001829_060 Hb_002471_080--Hb_001829_060 Hb_124755_010 Hb_124755_010 Hb_002471_080--Hb_124755_010 Hb_000329_310 Hb_000329_310 Hb_002471_080--Hb_000329_310 Hb_000024_030 Hb_000024_030 Hb_002471_080--Hb_000024_030 Hb_000817_030 Hb_000817_030 Hb_027625_010--Hb_000817_030 Hb_011644_030 Hb_011644_030 Hb_027625_010--Hb_011644_030 Hb_000230_510 Hb_000230_510 Hb_027625_010--Hb_000230_510 Hb_011537_110 Hb_011537_110 Hb_027625_010--Hb_011537_110 Hb_000072_180 Hb_000072_180 Hb_027625_010--Hb_000072_180 Hb_000398_040 Hb_000398_040 Hb_001775_110--Hb_000398_040 Hb_001083_020 Hb_001083_020 Hb_001775_110--Hb_001083_020 Hb_001775_110--Hb_001360_050 Hb_011909_100 Hb_011909_100 Hb_001775_110--Hb_011909_100 Hb_114336_020 Hb_114336_020 Hb_001775_110--Hb_114336_020 Hb_004724_340 Hb_004724_340 Hb_001360_050--Hb_004724_340 Hb_001833_110 Hb_001833_110 Hb_001360_050--Hb_001833_110 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_002759_060 Hb_002759_060 Hb_001360_050--Hb_002759_060 Hb_012675_060 Hb_012675_060 Hb_001360_050--Hb_012675_060 Hb_004374_140 Hb_004374_140 Hb_008544_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_008544_010--Hb_001461_010 Hb_000172_030 Hb_000172_030 Hb_008544_010--Hb_000172_030 Hb_004336_050 Hb_004336_050 Hb_008544_010--Hb_004336_050 Hb_008544_010--Hb_001191_090 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_003053_030 Hb_003053_030 Hb_001191_090--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_001191_090--Hb_148200_010 Hb_006573_220 Hb_006573_220 Hb_001191_090--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.84252 2.20961 3.80757 6.08142 6.24347 12.2549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1545 21.2943 22.5905 7.82338 6.62463

CAGE analysis