Hb_000046_300

Information

Type transcription factor
Description TF Family: TUB
Location Contig46: 239825-242839
Sequence    

Annotation

kegg
ID rcu:RCOM_0679690
description phosphoric diester hydrolase, putative
nr
ID XP_002516864.1
description phosphoric diester hydrolase, putative [Ricinus communis]
swissprot
ID Q10LG8
description Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1
trembl
ID B9RSZ5
description Tubby-like F-box protein OS=Ricinus communis GN=RCOM_0679690 PE=3 SV=1
Gene Ontology
ID GO:0016787
description tubby-like f-box protein 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43634: 238447-242859 , PASA_asmbl_43635: 238447-241715 , PASA_asmbl_43636: 238456-242789 , PASA_asmbl_43638: 239124-239282
cDNA
(Sanger)
(ID:Location)		 010_I15.ab1: 238456-240610 , 037_M03.ab1: 238489-240958

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_300 0.0 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
2 Hb_001439_150 0.0812056426 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
3 Hb_000666_110 0.0831311301 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
4 Hb_002024_040 0.0848241292 - - PREDICTED: adenosine kinase [Jatropha curcas]
5 Hb_001511_020 0.0879146488 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
6 Hb_001357_090 0.088639603 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
7 Hb_006065_020 0.0915688155 - - -
8 Hb_000000_080 0.091817066 - - lipoate-protein ligase B, putative [Ricinus communis]
9 Hb_001504_150 0.0918213957 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
10 Hb_000721_010 0.0939437624 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000141_060 0.0953766627 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
12 Hb_019962_030 0.0953779867 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
13 Hb_001898_230 0.0955603884 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
14 Hb_000481_040 0.0956392355 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
15 Hb_012627_050 0.0966105779 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_002784_050 0.1016528877 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
17 Hb_185467_010 0.1016972123 - - -
18 Hb_000162_090 0.1022569849 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
19 Hb_000905_190 0.1053269694 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
20 Hb_000890_040 0.1056462465 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_300 Hb_000046_300 Hb_001439_150 Hb_001439_150 Hb_000046_300--Hb_001439_150 Hb_000666_110 Hb_000666_110 Hb_000046_300--Hb_000666_110 Hb_002024_040 Hb_002024_040 Hb_000046_300--Hb_002024_040 Hb_001511_020 Hb_001511_020 Hb_000046_300--Hb_001511_020 Hb_001357_090 Hb_001357_090 Hb_000046_300--Hb_001357_090 Hb_006065_020 Hb_006065_020 Hb_000046_300--Hb_006065_020 Hb_007951_060 Hb_007951_060 Hb_001439_150--Hb_007951_060 Hb_002685_140 Hb_002685_140 Hb_001439_150--Hb_002685_140 Hb_001439_150--Hb_001511_020 Hb_000000_080 Hb_000000_080 Hb_001439_150--Hb_000000_080 Hb_000327_120 Hb_000327_120 Hb_001439_150--Hb_000327_120 Hb_168707_030 Hb_168707_030 Hb_001439_150--Hb_168707_030 Hb_001504_150 Hb_001504_150 Hb_000666_110--Hb_001504_150 Hb_019962_030 Hb_019962_030 Hb_000666_110--Hb_019962_030 Hb_000141_060 Hb_000141_060 Hb_000666_110--Hb_000141_060 Hb_000538_020 Hb_000538_020 Hb_000666_110--Hb_000538_020 Hb_000905_190 Hb_000905_190 Hb_000666_110--Hb_000905_190 Hb_005503_030 Hb_005503_030 Hb_000666_110--Hb_005503_030 Hb_008253_010 Hb_008253_010 Hb_002024_040--Hb_008253_010 Hb_007026_030 Hb_007026_030 Hb_002024_040--Hb_007026_030 Hb_000368_020 Hb_000368_020 Hb_002024_040--Hb_000368_020 Hb_007904_120 Hb_007904_120 Hb_002024_040--Hb_007904_120 Hb_002024_040--Hb_001357_090 Hb_001301_160 Hb_001301_160 Hb_001511_020--Hb_001301_160 Hb_000162_090 Hb_000162_090 Hb_001511_020--Hb_000162_090 Hb_001623_420 Hb_001623_420 Hb_001511_020--Hb_001623_420 Hb_003642_060 Hb_003642_060 Hb_001511_020--Hb_003642_060 Hb_001511_020--Hb_002685_140 Hb_003994_200 Hb_003994_200 Hb_001357_090--Hb_003994_200 Hb_003020_010 Hb_003020_010 Hb_001357_090--Hb_003020_010 Hb_000926_310 Hb_000926_310 Hb_001357_090--Hb_000926_310 Hb_001329_130 Hb_001329_130 Hb_001357_090--Hb_001329_130 Hb_000392_300 Hb_000392_300 Hb_006065_020--Hb_000392_300 Hb_006065_020--Hb_000000_080 Hb_005662_030 Hb_005662_030 Hb_006065_020--Hb_005662_030 Hb_000089_220 Hb_000089_220 Hb_006065_020--Hb_000089_220 Hb_000721_010 Hb_000721_010 Hb_006065_020--Hb_000721_010 Hb_006185_050 Hb_006185_050 Hb_006065_020--Hb_006185_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.6354 25.9633 44.3709 12.5752 64.541 70.8963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.3961 46.8071 54.2962 14.1785 17.401

CAGE analysis