Hb_000046_320

Information

Type -
Description -
Location Contig46: 253181-257911
Sequence    

Annotation

kegg
ID pmum:103322924
description probable serine/threonine-protein kinase At1g54610
nr
ID XP_012069405.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID A0A067L7E9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02022 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43642: 253304-257873
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_320 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
2 Hb_007904_260 0.0624311283 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
3 Hb_000985_030 0.0735074791 - - PREDICTED: RRP15-like protein [Populus euphratica]
4 Hb_000777_040 0.076955154 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
5 Hb_000749_220 0.0794700372 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
6 Hb_003177_030 0.0819550256 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
7 Hb_002998_060 0.0824580925 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
8 Hb_010361_010 0.0824891773 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
9 Hb_119600_070 0.0825349983 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
10 Hb_003053_020 0.0841327366 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
11 Hb_001512_030 0.0843815962 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
12 Hb_003540_030 0.0858901626 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
13 Hb_001009_270 0.0860039073 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
14 Hb_181288_020 0.0867507366 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
15 Hb_003605_090 0.088726625 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
16 Hb_003697_040 0.0895484102 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
17 Hb_001711_020 0.0899799447 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
18 Hb_050514_010 0.0916469005 - - hypothetical protein 29 [Hevea brasiliensis]
19 Hb_000403_060 0.0919398792 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
20 Hb_000599_250 0.0933978447 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]

Gene co-expression network

sample Hb_000046_320 Hb_000046_320 Hb_007904_260 Hb_007904_260 Hb_000046_320--Hb_007904_260 Hb_000985_030 Hb_000985_030 Hb_000046_320--Hb_000985_030 Hb_000777_040 Hb_000777_040 Hb_000046_320--Hb_000777_040 Hb_000749_220 Hb_000749_220 Hb_000046_320--Hb_000749_220 Hb_003177_030 Hb_003177_030 Hb_000046_320--Hb_003177_030 Hb_002998_060 Hb_002998_060 Hb_000046_320--Hb_002998_060 Hb_003053_020 Hb_003053_020 Hb_007904_260--Hb_003053_020 Hb_001512_030 Hb_001512_030 Hb_007904_260--Hb_001512_030 Hb_006117_070 Hb_006117_070 Hb_007904_260--Hb_006117_070 Hb_003697_040 Hb_003697_040 Hb_007904_260--Hb_003697_040 Hb_000638_250 Hb_000638_250 Hb_007904_260--Hb_000638_250 Hb_001489_080 Hb_001489_080 Hb_000985_030--Hb_001489_080 Hb_002169_040 Hb_002169_040 Hb_000985_030--Hb_002169_040 Hb_000783_020 Hb_000783_020 Hb_000985_030--Hb_000783_020 Hb_000985_030--Hb_000777_040 Hb_005269_070 Hb_005269_070 Hb_000985_030--Hb_005269_070 Hb_004934_100 Hb_004934_100 Hb_000985_030--Hb_004934_100 Hb_001009_270 Hb_001009_270 Hb_000777_040--Hb_001009_270 Hb_001633_050 Hb_001633_050 Hb_000777_040--Hb_001633_050 Hb_005779_060 Hb_005779_060 Hb_000777_040--Hb_005779_060 Hb_000206_210 Hb_000206_210 Hb_000777_040--Hb_000206_210 Hb_058999_020 Hb_058999_020 Hb_000777_040--Hb_058999_020 Hb_000749_220--Hb_003177_030 Hb_000172_290 Hb_000172_290 Hb_000749_220--Hb_000172_290 Hb_000477_060 Hb_000477_060 Hb_000749_220--Hb_000477_060 Hb_000003_250 Hb_000003_250 Hb_000749_220--Hb_000003_250 Hb_005490_030 Hb_005490_030 Hb_000749_220--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_000749_220--Hb_001159_130 Hb_003177_030--Hb_001009_270 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_003177_030--Hb_001159_130 Hb_000019_030 Hb_000019_030 Hb_003177_030--Hb_000019_030 Hb_000656_040 Hb_000656_040 Hb_002998_060--Hb_000656_040 Hb_002998_060--Hb_003177_030 Hb_000050_200 Hb_000050_200 Hb_002998_060--Hb_000050_200 Hb_002998_060--Hb_000019_030 Hb_000096_010 Hb_000096_010 Hb_002998_060--Hb_000096_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3583 4.35946 13.1077 16.2345 13.674 17.0145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0923 25.6569 30.4094 12.5115 13.9461

CAGE analysis