Hb_000046_350

Information

Type -
Description -
Location Contig46: 266476-268612
Sequence    

Annotation

kegg
ID rcu:RCOM_0679750
description hypothetical protein
nr
ID XP_002516870.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RT01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0679750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43645: 266476-268604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_350 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000072_180 0.0581132935 - - PREDICTED: EVI5-like protein [Jatropha curcas]
3 Hb_004672_010 0.0729946562 - - ecotropic viral integration site, putative [Ricinus communis]
4 Hb_001222_080 0.0736122071 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
5 Hb_001284_030 0.0767331693 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
6 Hb_148113_010 0.0831499589 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
7 Hb_006420_100 0.0833693709 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
8 Hb_002284_230 0.0851937684 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
9 Hb_000635_150 0.089235907 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
10 Hb_004837_160 0.0893079047 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
11 Hb_000985_060 0.0906867806 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
12 Hb_000120_020 0.0917721374 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
13 Hb_028515_010 0.0941896038 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
14 Hb_002007_210 0.0947799531 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
15 Hb_011381_080 0.0951251086 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
16 Hb_002111_040 0.0961028614 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
17 Hb_008232_010 0.0961577293 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
18 Hb_005488_200 0.0963639931 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
19 Hb_000817_030 0.0984971236 - - mak, putative [Ricinus communis]
20 Hb_000574_130 0.1001339042 - - calcineurin-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000046_350 Hb_000046_350 Hb_000072_180 Hb_000072_180 Hb_000046_350--Hb_000072_180 Hb_004672_010 Hb_004672_010 Hb_000046_350--Hb_004672_010 Hb_001222_080 Hb_001222_080 Hb_000046_350--Hb_001222_080 Hb_001284_030 Hb_001284_030 Hb_000046_350--Hb_001284_030 Hb_148113_010 Hb_148113_010 Hb_000046_350--Hb_148113_010 Hb_006420_100 Hb_006420_100 Hb_000046_350--Hb_006420_100 Hb_000072_180--Hb_006420_100 Hb_000072_180--Hb_004672_010 Hb_028515_010 Hb_028515_010 Hb_000072_180--Hb_028515_010 Hb_027625_010 Hb_027625_010 Hb_000072_180--Hb_027625_010 Hb_000072_180--Hb_148113_010 Hb_005137_060 Hb_005137_060 Hb_004672_010--Hb_005137_060 Hb_000417_260 Hb_000417_260 Hb_004672_010--Hb_000417_260 Hb_008232_010 Hb_008232_010 Hb_004672_010--Hb_008232_010 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050 Hb_011344_190 Hb_011344_190 Hb_001222_080--Hb_011344_190 Hb_000922_040 Hb_000922_040 Hb_001222_080--Hb_000922_040 Hb_004837_160 Hb_004837_160 Hb_001222_080--Hb_004837_160 Hb_089032_030 Hb_089032_030 Hb_001222_080--Hb_089032_030 Hb_001222_080--Hb_008232_010 Hb_002918_290 Hb_002918_290 Hb_001284_030--Hb_002918_290 Hb_000042_200 Hb_000042_200 Hb_001284_030--Hb_000042_200 Hb_033153_060 Hb_033153_060 Hb_001284_030--Hb_033153_060 Hb_068056_030 Hb_068056_030 Hb_001284_030--Hb_068056_030 Hb_161175_010 Hb_161175_010 Hb_001284_030--Hb_161175_010 Hb_005488_200 Hb_005488_200 Hb_148113_010--Hb_005488_200 Hb_000023_090 Hb_000023_090 Hb_148113_010--Hb_000023_090 Hb_148113_010--Hb_028515_010 Hb_000120_020 Hb_000120_020 Hb_148113_010--Hb_000120_020 Hb_002111_040 Hb_002111_040 Hb_006420_100--Hb_002111_040 Hb_002183_060 Hb_002183_060 Hb_006420_100--Hb_002183_060 Hb_001545_170 Hb_001545_170 Hb_006420_100--Hb_001545_170 Hb_006420_100--Hb_000023_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.59201 5.69562 4.44645 19.8296 6.92809 12.0292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5674 27.5698 25.2484 14.4249 14.2553

CAGE analysis