Hb_000046_400

Information

Type -
Description -
Location Contig46: 299683-301869
Sequence    

Annotation

kegg
ID rcu:RCOM_0680180
description hypothetical protein
nr
ID XP_002516873.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9RT04
description CASP-like protein 1E1 OS=Ricinus communis GN=RCOM_0680180 PE=2 SV=1
trembl
ID A0A067L7E4
description CASP-like protein OS=Jatropha curcas GN=JCGZ_02017 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein vit_05s0020g01820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43647: 299777-301839
cDNA
(Sanger)
(ID:Location)		 003_P07.ab1: 299777-301631 , 048_F05.ab1: 299777-301630

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_400 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_029879_020 0.025696348 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
3 Hb_007317_030 0.0351705499 - - -
4 Hb_000251_150 0.0389992745 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
5 Hb_000179_010 0.0495078533 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
6 Hb_000987_030 0.0533988541 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
7 Hb_158001_010 0.056448767 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
8 Hb_065774_010 0.0594687003 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
9 Hb_000979_120 0.0619466294 - - Pectinesterase-1 precursor, putative [Ricinus communis]
10 Hb_029991_010 0.0662619591 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
11 Hb_154064_010 0.0662799195 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
12 Hb_003186_030 0.0664039316 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
13 Hb_001307_050 0.0695487298 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
14 Hb_005743_050 0.0704972676 - - unnamed protein product [Coffea canephora]
15 Hb_031862_220 0.0729773634 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
16 Hb_001232_070 0.0739843494 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004452_070 0.0742366453 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
18 Hb_002391_340 0.0744616189 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
19 Hb_085682_010 0.0747541721 - - -
20 Hb_004837_010 0.0760381544 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000046_400 Hb_000046_400 Hb_029879_020 Hb_029879_020 Hb_000046_400--Hb_029879_020 Hb_007317_030 Hb_007317_030 Hb_000046_400--Hb_007317_030 Hb_000251_150 Hb_000251_150 Hb_000046_400--Hb_000251_150 Hb_000179_010 Hb_000179_010 Hb_000046_400--Hb_000179_010 Hb_000987_030 Hb_000987_030 Hb_000046_400--Hb_000987_030 Hb_158001_010 Hb_158001_010 Hb_000046_400--Hb_158001_010 Hb_029879_020--Hb_007317_030 Hb_029879_020--Hb_000251_150 Hb_029879_020--Hb_000987_030 Hb_154064_010 Hb_154064_010 Hb_029879_020--Hb_154064_010 Hb_065774_010 Hb_065774_010 Hb_029879_020--Hb_065774_010 Hb_007317_030--Hb_065774_010 Hb_007317_030--Hb_154064_010 Hb_007317_030--Hb_000987_030 Hb_007317_030--Hb_000251_150 Hb_000251_150--Hb_000987_030 Hb_005743_050 Hb_005743_050 Hb_000251_150--Hb_005743_050 Hb_000251_150--Hb_000179_010 Hb_004452_070 Hb_004452_070 Hb_000251_150--Hb_004452_070 Hb_004837_010 Hb_004837_010 Hb_000179_010--Hb_004837_010 Hb_001307_050 Hb_001307_050 Hb_000179_010--Hb_001307_050 Hb_000179_010--Hb_158001_010 Hb_029991_010 Hb_029991_010 Hb_000179_010--Hb_029991_010 Hb_000987_030--Hb_005743_050 Hb_000987_030--Hb_158001_010 Hb_001049_130 Hb_001049_130 Hb_000987_030--Hb_001049_130 Hb_000979_120 Hb_000979_120 Hb_000987_030--Hb_000979_120 Hb_031862_220 Hb_031862_220 Hb_000987_030--Hb_031862_220 Hb_158001_010--Hb_005743_050 Hb_085682_010 Hb_085682_010 Hb_158001_010--Hb_085682_010 Hb_001295_070 Hb_001295_070 Hb_158001_010--Hb_001295_070 Hb_001507_060 Hb_001507_060 Hb_158001_010--Hb_001507_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.408611 71.2937 66.3118 0 0.0460877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.290177 190.483

CAGE analysis