Hb_000046_440

Information

Type transcription factor
Description TF Family: SNF2
Location Contig46: 347226-355342
Sequence    

Annotation

kegg
ID rcu:RCOM_0680240
description helicase, putative (EC:2.7.11.1)
nr
ID XP_012069393.1
description PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
swissprot
ID Q8RWY3
description Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=3
trembl
ID A0A067L7D7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02012 PE=4 SV=1
Gene Ontology
ID GO:0016589
description chromatin-remodeling complex atpase chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43649: 347241-355272 , PASA_asmbl_43650: 339976-355272 , PASA_asmbl_43651: 353014-355056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_440 0.0 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
2 Hb_026099_010 0.0663061043 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
3 Hb_021409_170 0.0663843013 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
4 Hb_000789_080 0.0741243636 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
5 Hb_000429_120 0.0746881616 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
6 Hb_001221_040 0.0748507959 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
7 Hb_000567_050 0.0750864359 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
8 Hb_016657_010 0.0753317607 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
9 Hb_010931_080 0.0755364226 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
10 Hb_028487_110 0.0758681741 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
11 Hb_006114_030 0.0787076942 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
12 Hb_007407_040 0.0811047299 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_004370_030 0.0827597647 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
14 Hb_003673_060 0.0830683522 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
15 Hb_003052_150 0.0840010509 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
16 Hb_000316_030 0.0856567062 - - zinc finger protein, putative [Ricinus communis]
17 Hb_004108_140 0.0859266107 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
18 Hb_000179_020 0.0862515775 - - amidase, putative [Ricinus communis]
19 Hb_000023_190 0.08711682 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
20 Hb_000335_010 0.0884626784 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000046_440 Hb_000046_440 Hb_026099_010 Hb_026099_010 Hb_000046_440--Hb_026099_010 Hb_021409_170 Hb_021409_170 Hb_000046_440--Hb_021409_170 Hb_000789_080 Hb_000789_080 Hb_000046_440--Hb_000789_080 Hb_000429_120 Hb_000429_120 Hb_000046_440--Hb_000429_120 Hb_001221_040 Hb_001221_040 Hb_000046_440--Hb_001221_040 Hb_000567_050 Hb_000567_050 Hb_000046_440--Hb_000567_050 Hb_004108_140 Hb_004108_140 Hb_026099_010--Hb_004108_140 Hb_026099_010--Hb_001221_040 Hb_002044_060 Hb_002044_060 Hb_026099_010--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_026099_010--Hb_004370_030 Hb_026099_010--Hb_000789_080 Hb_003464_020 Hb_003464_020 Hb_021409_170--Hb_003464_020 Hb_021409_170--Hb_001221_040 Hb_000436_040 Hb_000436_040 Hb_021409_170--Hb_000436_040 Hb_000023_190 Hb_000023_190 Hb_021409_170--Hb_000023_190 Hb_021409_170--Hb_000789_080 Hb_000531_090 Hb_000531_090 Hb_000789_080--Hb_000531_090 Hb_002893_150 Hb_002893_150 Hb_000789_080--Hb_002893_150 Hb_000335_010 Hb_000335_010 Hb_000789_080--Hb_000335_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180 Hb_000789_080--Hb_002044_060 Hb_001866_110 Hb_001866_110 Hb_000429_120--Hb_001866_110 Hb_002027_270 Hb_002027_270 Hb_000429_120--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_000429_120--Hb_004619_050 Hb_016898_010 Hb_016898_010 Hb_000429_120--Hb_016898_010 Hb_028487_110 Hb_028487_110 Hb_000429_120--Hb_028487_110 Hb_004450_010 Hb_004450_010 Hb_001221_040--Hb_004450_010 Hb_002675_060 Hb_002675_060 Hb_001221_040--Hb_002675_060 Hb_024990_010 Hb_024990_010 Hb_001221_040--Hb_024990_010 Hb_003428_070 Hb_003428_070 Hb_000567_050--Hb_003428_070 Hb_000567_050--Hb_000023_190 Hb_000743_040 Hb_000743_040 Hb_000567_050--Hb_000743_040 Hb_000600_070 Hb_000600_070 Hb_000567_050--Hb_000600_070 Hb_000567_050--Hb_002044_060 Hb_010381_060 Hb_010381_060 Hb_000567_050--Hb_010381_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.8586 25.6032 16.6077 16.223 54.6829 82.6819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.6632 18.2256 28.7061 38.1458 26.7457

CAGE analysis