Hb_000046_490

Information

Type -
Description -
Location Contig46: 379049-379393
Sequence    

Annotation

kegg
ID pop:POPTR_0005s09880g
description POPTRDRAFT_1077689; hypothetical protein
nr
ID XP_012087381.1
description PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22629 PE=4 SV=1
Gene Ontology
ID GO:0009506
description PREDICTED: uncharacterized protein LOC105646185

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_490 0.0 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
2 Hb_000092_130 0.1249749294 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
3 Hb_003544_020 0.1361011181 - - PREDICTED: elongin-A [Jatropha curcas]
4 Hb_002081_070 0.1549043648 - - PREDICTED: pyridoxal kinase [Jatropha curcas]
5 Hb_139294_020 0.1552454059 - - vat protein [Cucumis melo]
6 Hb_005245_080 0.1570434197 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
7 Hb_008686_080 0.1573570909 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
8 Hb_002045_040 0.1590447073 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_000805_120 0.1708945208 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
10 Hb_001449_010 0.1737484122 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002183_070 0.1741622809 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
12 Hb_000684_270 0.1742621632 - - PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
13 Hb_077354_010 0.1767363551 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
14 Hb_003126_090 0.1767868406 - - Rop1 [Hevea brasiliensis]
15 Hb_021056_020 0.1769001369 - - plasma membrane H+-ATPase [Hevea brasiliensis]
16 Hb_001504_050 0.1769800091 - - hypothetical protein POPTR_0001s14840g [Populus trichocarpa]
17 Hb_001124_090 0.17891835 - - acyl carrier protein, putative [Ricinus communis]
18 Hb_033594_110 0.1795806999 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
19 Hb_000934_250 0.1796884053 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
20 Hb_000186_190 0.1819767823 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_490 Hb_000046_490 Hb_000092_130 Hb_000092_130 Hb_000046_490--Hb_000092_130 Hb_003544_020 Hb_003544_020 Hb_000046_490--Hb_003544_020 Hb_002081_070 Hb_002081_070 Hb_000046_490--Hb_002081_070 Hb_139294_020 Hb_139294_020 Hb_000046_490--Hb_139294_020 Hb_005245_080 Hb_005245_080 Hb_000046_490--Hb_005245_080 Hb_008686_080 Hb_008686_080 Hb_000046_490--Hb_008686_080 Hb_011316_100 Hb_011316_100 Hb_000092_130--Hb_011316_100 Hb_000092_130--Hb_003544_020 Hb_002301_290 Hb_002301_290 Hb_000092_130--Hb_002301_290 Hb_002183_070 Hb_002183_070 Hb_000092_130--Hb_002183_070 Hb_000092_130--Hb_002081_070 Hb_005773_060 Hb_005773_060 Hb_003544_020--Hb_005773_060 Hb_001221_320 Hb_001221_320 Hb_003544_020--Hb_001221_320 Hb_000186_190 Hb_000186_190 Hb_003544_020--Hb_000186_190 Hb_002811_260 Hb_002811_260 Hb_003544_020--Hb_002811_260 Hb_003544_020--Hb_008686_080 Hb_001814_070 Hb_001814_070 Hb_003544_020--Hb_001814_070 Hb_000030_290 Hb_000030_290 Hb_002081_070--Hb_000030_290 Hb_002081_070--Hb_005245_080 Hb_001504_050 Hb_001504_050 Hb_002081_070--Hb_001504_050 Hb_150651_040 Hb_150651_040 Hb_002081_070--Hb_150651_040 Hb_002045_040 Hb_002045_040 Hb_002081_070--Hb_002045_040 Hb_002081_070--Hb_003544_020 Hb_126861_010 Hb_126861_010 Hb_139294_020--Hb_126861_010 Hb_021596_090 Hb_021596_090 Hb_139294_020--Hb_021596_090 Hb_139294_020--Hb_008686_080 Hb_002995_020 Hb_002995_020 Hb_139294_020--Hb_002995_020 Hb_000805_120 Hb_000805_120 Hb_139294_020--Hb_000805_120 Hb_007044_120 Hb_007044_120 Hb_139294_020--Hb_007044_120 Hb_005245_080--Hb_150651_040 Hb_089995_010 Hb_089995_010 Hb_005245_080--Hb_089995_010 Hb_005391_040 Hb_005391_040 Hb_005245_080--Hb_005391_040 Hb_008013_050 Hb_008013_050 Hb_005245_080--Hb_008013_050 Hb_005245_080--Hb_000030_290 Hb_004724_270 Hb_004724_270 Hb_005245_080--Hb_004724_270 Hb_007477_070 Hb_007477_070 Hb_008686_080--Hb_007477_070 Hb_001328_040 Hb_001328_040 Hb_008686_080--Hb_001328_040 Hb_001662_070 Hb_001662_070 Hb_008686_080--Hb_001662_070 Hb_008686_080--Hb_000805_120 Hb_008686_080--Hb_001221_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18106 1.68047 6.7042 3.47479 2.61547 3.56642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6428 6.35959 2.89564 2.36201 0.703262

CAGE analysis