Hb_000046_520

Information

Type -
Description -
Location Contig46: 390061-391997
Sequence    

Annotation

kegg
ID rcu:RCOM_0680330
description serine/threonine protein kinase, putative
nr
ID XP_012069380.1
description PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
swissprot
ID Q9CAL8
description Proline-rich receptor-like protein kinase PERK13 OS=Arabidopsis thaliana GN=PERK13 PE=2 SV=1
trembl
ID A0A067KUV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02004 PE=4 SV=1
Gene Ontology
ID GO:0004674
description kinase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43659: 389596-392153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_520 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
2 Hb_008775_030 0.0995945816 - - PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Jatropha curcas]
3 Hb_003038_110 0.1467984466 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
4 Hb_107078_010 0.1495056752 - - -
5 Hb_002794_040 0.1582148516 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
6 Hb_007576_130 0.1614797964 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
7 Hb_000392_240 0.162529687 - - DNA binding protein, putative [Ricinus communis]
8 Hb_001396_040 0.1638831174 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
9 Hb_011918_030 0.1642645201 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
10 Hb_015531_010 0.1652167467 - - PREDICTED: uncharacterized protein LOC105636764 [Jatropha curcas]
11 Hb_004846_230 0.1657731644 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
12 Hb_001579_190 0.1682551164 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000308_010 0.1686198206 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
14 Hb_003688_220 0.1690004427 - - unknown [Populus trichocarpa]
15 Hb_000260_240 0.1717788583 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
16 Hb_001951_210 0.1731136166 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000020_080 0.177263496 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
18 Hb_001638_120 0.1804778356 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
19 Hb_000110_240 0.1806631181 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
20 Hb_000134_260 0.1809290736 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000046_520 Hb_000046_520 Hb_008775_030 Hb_008775_030 Hb_000046_520--Hb_008775_030 Hb_003038_110 Hb_003038_110 Hb_000046_520--Hb_003038_110 Hb_107078_010 Hb_107078_010 Hb_000046_520--Hb_107078_010 Hb_002794_040 Hb_002794_040 Hb_000046_520--Hb_002794_040 Hb_007576_130 Hb_007576_130 Hb_000046_520--Hb_007576_130 Hb_000392_240 Hb_000392_240 Hb_000046_520--Hb_000392_240 Hb_001951_210 Hb_001951_210 Hb_008775_030--Hb_001951_210 Hb_000020_080 Hb_000020_080 Hb_008775_030--Hb_000020_080 Hb_000308_010 Hb_000308_010 Hb_008775_030--Hb_000308_010 Hb_001579_190 Hb_001579_190 Hb_008775_030--Hb_001579_190 Hb_011918_030 Hb_011918_030 Hb_008775_030--Hb_011918_030 Hb_001022_020 Hb_001022_020 Hb_003038_110--Hb_001022_020 Hb_015531_010 Hb_015531_010 Hb_003038_110--Hb_015531_010 Hb_001396_040 Hb_001396_040 Hb_003038_110--Hb_001396_040 Hb_000134_260 Hb_000134_260 Hb_003038_110--Hb_000134_260 Hb_002374_200 Hb_002374_200 Hb_003038_110--Hb_002374_200 Hb_107078_010--Hb_011918_030 Hb_008173_130 Hb_008173_130 Hb_107078_010--Hb_008173_130 Hb_000260_240 Hb_000260_240 Hb_107078_010--Hb_000260_240 Hb_001638_120 Hb_001638_120 Hb_107078_010--Hb_001638_120 Hb_107078_010--Hb_000020_080 Hb_000076_090 Hb_000076_090 Hb_107078_010--Hb_000076_090 Hb_004846_230 Hb_004846_230 Hb_002794_040--Hb_004846_230 Hb_002435_090 Hb_002435_090 Hb_002794_040--Hb_002435_090 Hb_002794_040--Hb_000392_240 Hb_188739_010 Hb_188739_010 Hb_002794_040--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_002794_040--Hb_001343_120 Hb_007120_130 Hb_007120_130 Hb_007576_130--Hb_007120_130 Hb_000538_250 Hb_000538_250 Hb_007576_130--Hb_000538_250 Hb_001638_190 Hb_001638_190 Hb_007576_130--Hb_001638_190 Hb_001898_100 Hb_001898_100 Hb_007576_130--Hb_001898_100 Hb_001352_030 Hb_001352_030 Hb_007576_130--Hb_001352_030 Hb_003337_020 Hb_003337_020 Hb_007576_130--Hb_003337_020 Hb_005527_060 Hb_005527_060 Hb_000392_240--Hb_005527_060 Hb_000446_040 Hb_000446_040 Hb_000392_240--Hb_000446_040 Hb_002942_120 Hb_002942_120 Hb_000392_240--Hb_002942_120 Hb_003106_200 Hb_003106_200 Hb_000392_240--Hb_003106_200 Hb_000011_560 Hb_000011_560 Hb_000392_240--Hb_000011_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0533415 0.73926 2.84717 0.544099 0.0499758 0.102844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.191671 0 0.217551 0.727201

CAGE analysis