Hb_000046_530

Information

Type transcription factor
Description TF Family: ERF
Location Contig46: 397951-398982
Sequence    

Annotation

kegg
ID rcu:RCOM_0680360
description DNA binding protein, putative
nr
ID XP_012069379.1
description PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
swissprot
ID Q6J9Q2
description Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2
trembl
ID A0A067L675
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02003 PE=4 SV=1
Gene Ontology
ID GO:0009908
description ethylene-responsive transcription factor erf086

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_530 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
2 Hb_000640_180 0.0080752383 - - enzyme inhibitor, putative [Ricinus communis]
3 Hb_000563_580 0.0151633787 - - acyltransferase, putative [Ricinus communis]
4 Hb_102748_010 0.0314297481 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_143629_160 0.103170642 - - nitrate transporter, putative [Ricinus communis]
6 Hb_176082_010 0.1556075269 - - PREDICTED: pirin-like protein [Jatropha curcas]
7 Hb_148777_020 0.1929500288 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X1 [Populus euphratica]
8 Hb_003517_030 0.21608864 - - PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
9 Hb_000553_070 0.2398042325 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
10 Hb_012366_010 0.3049023943 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
11 Hb_089785_010 0.312722301 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
12 Hb_066415_010 0.3251328578 - - -
13 Hb_005654_020 0.3320797907 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_009815_010 0.3524506901 - - -
15 Hb_000679_160 0.3618997803 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
16 Hb_002740_070 0.3735885489 - - nitrate transporter, putative [Ricinus communis]
17 Hb_001823_080 0.3845806449 - - hypothetical protein VITISV_012142 [Vitis vinifera]
18 Hb_001157_070 0.3920263263 - - -
19 Hb_000009_490 0.3967334414 - - hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
20 Hb_145708_010 0.3988427029 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_530 Hb_000046_530 Hb_000640_180 Hb_000640_180 Hb_000046_530--Hb_000640_180 Hb_000563_580 Hb_000563_580 Hb_000046_530--Hb_000563_580 Hb_102748_010 Hb_102748_010 Hb_000046_530--Hb_102748_010 Hb_143629_160 Hb_143629_160 Hb_000046_530--Hb_143629_160 Hb_176082_010 Hb_176082_010 Hb_000046_530--Hb_176082_010 Hb_148777_020 Hb_148777_020 Hb_000046_530--Hb_148777_020 Hb_000640_180--Hb_000563_580 Hb_000640_180--Hb_102748_010 Hb_000640_180--Hb_143629_160 Hb_000640_180--Hb_176082_010 Hb_000640_180--Hb_148777_020 Hb_000563_580--Hb_102748_010 Hb_000563_580--Hb_143629_160 Hb_000563_580--Hb_176082_010 Hb_000563_580--Hb_148777_020 Hb_102748_010--Hb_176082_010 Hb_102748_010--Hb_143629_160 Hb_102748_010--Hb_148777_020 Hb_143629_160--Hb_176082_010 Hb_066415_010 Hb_066415_010 Hb_143629_160--Hb_066415_010 Hb_176082_010--Hb_148777_020 Hb_003517_030 Hb_003517_030 Hb_176082_010--Hb_003517_030 Hb_012366_010 Hb_012366_010 Hb_176082_010--Hb_012366_010 Hb_089785_010 Hb_089785_010 Hb_176082_010--Hb_089785_010 Hb_148777_020--Hb_003517_030 Hb_148777_020--Hb_012366_010 Hb_148777_020--Hb_089785_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0363877 0.0399063 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis