Hb_000046_540

Information

Type transcription factor
Description TF Family: C3H
Location Contig46: 400530-407271
Sequence    

Annotation

kegg
ID pop:POPTR_0010s02320g
description POPTRDRAFT_884937; hypothetical protein
nr
ID XP_011013662.1
description PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
swissprot
ID Q84W91
description Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2
trembl
ID B9HSD6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s02320g PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43661: 400520-407463 , PASA_asmbl_43662: 405833-407463 , PASA_asmbl_43663: 401979-402386
cDNA
(Sanger)
(ID:Location)		 030_O13.ab1: 406475-407463

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_540 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
2 Hb_002078_340 0.0531616251 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
3 Hb_002025_250 0.0672631223 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
4 Hb_000078_140 0.0766240029 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
5 Hb_001195_400 0.0768848503 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
6 Hb_002769_030 0.0774953759 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
7 Hb_000300_470 0.0792567722 - - PREDICTED: nucleolin-like [Jatropha curcas]
8 Hb_010863_050 0.0806019739 - - OTU domain-containing protein 6B, putative [Ricinus communis]
9 Hb_000359_210 0.0807086314 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008705_020 0.0817958381 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
11 Hb_000212_230 0.0825993039 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
12 Hb_000529_180 0.0826234917 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
13 Hb_001163_060 0.0827842579 - - neutral/alkaline invertase [Manihot esculenta]
14 Hb_000635_060 0.0838863585 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
15 Hb_073171_070 0.0846926587 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
16 Hb_000365_240 0.0851345949 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
17 Hb_001014_070 0.0852677989 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
18 Hb_004108_160 0.0863355453 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
19 Hb_011377_040 0.0869058498 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
20 Hb_000167_110 0.0877352063 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000046_540 Hb_000046_540 Hb_002078_340 Hb_002078_340 Hb_000046_540--Hb_002078_340 Hb_002025_250 Hb_002025_250 Hb_000046_540--Hb_002025_250 Hb_000078_140 Hb_000078_140 Hb_000046_540--Hb_000078_140 Hb_001195_400 Hb_001195_400 Hb_000046_540--Hb_001195_400 Hb_002769_030 Hb_002769_030 Hb_000046_540--Hb_002769_030 Hb_000300_470 Hb_000300_470 Hb_000046_540--Hb_000300_470 Hb_000482_040 Hb_000482_040 Hb_002078_340--Hb_000482_040 Hb_012150_030 Hb_012150_030 Hb_002078_340--Hb_012150_030 Hb_003153_010 Hb_003153_010 Hb_002078_340--Hb_003153_010 Hb_003376_230 Hb_003376_230 Hb_002078_340--Hb_003376_230 Hb_000364_050 Hb_000364_050 Hb_002078_340--Hb_000364_050 Hb_008705_020 Hb_008705_020 Hb_002025_250--Hb_008705_020 Hb_000853_440 Hb_000853_440 Hb_002025_250--Hb_000853_440 Hb_002025_250--Hb_002078_340 Hb_000529_180 Hb_000529_180 Hb_002025_250--Hb_000529_180 Hb_000167_110 Hb_000167_110 Hb_002025_250--Hb_000167_110 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_074197_040 Hb_074197_040 Hb_000078_140--Hb_074197_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_000078_140--Hb_001195_400 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_000185_220 Hb_000185_220 Hb_001195_400--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_001195_400--Hb_003206_110 Hb_000039_150 Hb_000039_150 Hb_002769_030--Hb_000039_150 Hb_008959_010 Hb_008959_010 Hb_002769_030--Hb_008959_010 Hb_002769_030--Hb_003153_010 Hb_001163_060 Hb_001163_060 Hb_002769_030--Hb_001163_060 Hb_001629_030 Hb_001629_030 Hb_002769_030--Hb_001629_030 Hb_004108_160 Hb_004108_160 Hb_002769_030--Hb_004108_160 Hb_013405_080 Hb_013405_080 Hb_000300_470--Hb_013405_080 Hb_005260_030 Hb_005260_030 Hb_000300_470--Hb_005260_030 Hb_000237_200 Hb_000237_200 Hb_000300_470--Hb_000237_200 Hb_002774_190 Hb_002774_190 Hb_000300_470--Hb_002774_190 Hb_004218_190 Hb_004218_190 Hb_000300_470--Hb_004218_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.58531 4.5104 8.15356 7.08415 4.6022 4.25766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.69272 4.3159 7.04955 7.24993 13.4131

CAGE analysis