Hb_000046_560

Information

Type -
Description -
Location Contig46: 413477-415254
Sequence    

Annotation

kegg
ID pop:POPTR_0008s22650g
description hypothetical protein
nr
ID XP_011014798.1
description PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5G6R2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s22650g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43664: 413430-415201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_560 0.0 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
2 Hb_006925_040 0.0702000172 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
3 Hb_002783_270 0.0724521502 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
4 Hb_003683_110 0.081327567 - - JHL10I11.3 [Jatropha curcas]
5 Hb_000996_140 0.0828755271 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
6 Hb_007044_130 0.0847773893 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
7 Hb_004157_030 0.0849259549 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
8 Hb_012573_070 0.0878556399 - - conserved hypothetical protein [Ricinus communis]
9 Hb_174865_010 0.0882614907 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
10 Hb_002798_020 0.0911308934 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
11 Hb_003226_100 0.0913697759 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
12 Hb_000029_200 0.092313091 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
13 Hb_000506_070 0.0925169838 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
14 Hb_000699_160 0.0925521583 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
15 Hb_001141_140 0.09270495 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
16 Hb_002768_030 0.0930262413 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
17 Hb_014720_040 0.0935410375 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
18 Hb_000735_040 0.0946967721 - - 60S ribosomal protein L32A [Hevea brasiliensis]
19 Hb_000948_210 0.0949402132 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
20 Hb_000062_650 0.0953166683 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_560 Hb_000046_560 Hb_006925_040 Hb_006925_040 Hb_000046_560--Hb_006925_040 Hb_002783_270 Hb_002783_270 Hb_000046_560--Hb_002783_270 Hb_003683_110 Hb_003683_110 Hb_000046_560--Hb_003683_110 Hb_000996_140 Hb_000996_140 Hb_000046_560--Hb_000996_140 Hb_007044_130 Hb_007044_130 Hb_000046_560--Hb_007044_130 Hb_004157_030 Hb_004157_030 Hb_000046_560--Hb_004157_030 Hb_001141_140 Hb_001141_140 Hb_006925_040--Hb_001141_140 Hb_006925_040--Hb_002783_270 Hb_003053_010 Hb_003053_010 Hb_006925_040--Hb_003053_010 Hb_006925_040--Hb_007044_130 Hb_006925_040--Hb_000996_140 Hb_002783_270--Hb_007044_130 Hb_003894_070 Hb_003894_070 Hb_002783_270--Hb_003894_070 Hb_003058_080 Hb_003058_080 Hb_002783_270--Hb_003058_080 Hb_001341_090 Hb_001341_090 Hb_002783_270--Hb_001341_090 Hb_002768_030 Hb_002768_030 Hb_003683_110--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_003683_110--Hb_001780_040 Hb_012573_070 Hb_012573_070 Hb_003683_110--Hb_012573_070 Hb_000453_090 Hb_000453_090 Hb_003683_110--Hb_000453_090 Hb_003226_100 Hb_003226_100 Hb_003683_110--Hb_003226_100 Hb_007416_030 Hb_007416_030 Hb_003683_110--Hb_007416_030 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_026053_020 Hb_026053_020 Hb_000996_140--Hb_026053_020 Hb_010175_040 Hb_010175_040 Hb_000996_140--Hb_010175_040 Hb_000996_140--Hb_003226_100 Hb_000996_140--Hb_002768_030 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010 Hb_007044_130--Hb_001141_140 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_007044_130--Hb_003894_070 Hb_004157_030--Hb_003226_100 Hb_003018_020 Hb_003018_020 Hb_004157_030--Hb_003018_020 Hb_001814_050 Hb_001814_050 Hb_004157_030--Hb_001814_050 Hb_000134_070 Hb_000134_070 Hb_004157_030--Hb_000134_070 Hb_000506_070 Hb_000506_070 Hb_004157_030--Hb_000506_070 Hb_174865_010 Hb_174865_010 Hb_004157_030--Hb_174865_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3771 5.07357 18.4075 15.1503 12.4621 21.7655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.186 62.1219 16.0639 8.49219 10.1963

CAGE analysis