Hb_000046_590

Information

Type -
Description -
Location Contig46: 458600-460285
Sequence    

Annotation

kegg
ID rcu:RCOM_0680420
description Flavonol synthase/flavanone 3-hydroxylase, putative (EC:1.14.11.23)
nr
ID XP_002516897.1
description Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID B9RT28
description Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis GN=RCOM_0680420 PE=3 SV=1
Gene Ontology
ID GO:0045431
description protein srg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_590 0.0 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
2 Hb_008215_010 0.104286723 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001832_240 0.114696405 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
4 Hb_000598_020 0.1163747871 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
5 Hb_008080_030 0.124969875 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
6 Hb_007765_140 0.1280411319 - - PREDICTED: protein NRT1/ PTR FAMILY 8.1-like [Jatropha curcas]
7 Hb_187991_010 0.1285689894 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_005628_050 0.1290944596 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
9 Hb_000075_110 0.1319274872 - - aldo-keto reductase, putative [Ricinus communis]
10 Hb_000417_120 0.1354034289 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
11 Hb_000836_390 0.1357483059 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
12 Hb_165404_010 0.1362801293 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
13 Hb_000720_110 0.1383618563 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
14 Hb_162286_030 0.1399633369 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
15 Hb_000359_280 0.1403947307 - - hypothetical protein OsI_15300 [Oryza sativa Indica Group]
16 Hb_075449_040 0.1519309831 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
17 Hb_003751_050 0.1548852561 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
18 Hb_063523_010 0.1580506893 - - -
19 Hb_002110_060 0.1605374521 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
20 Hb_006925_060 0.1611452805 - - hypothetical protein JCGZ_20651 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_590 Hb_000046_590 Hb_008215_010 Hb_008215_010 Hb_000046_590--Hb_008215_010 Hb_001832_240 Hb_001832_240 Hb_000046_590--Hb_001832_240 Hb_000598_020 Hb_000598_020 Hb_000046_590--Hb_000598_020 Hb_008080_030 Hb_008080_030 Hb_000046_590--Hb_008080_030 Hb_007765_140 Hb_007765_140 Hb_000046_590--Hb_007765_140 Hb_187991_010 Hb_187991_010 Hb_000046_590--Hb_187991_010 Hb_000836_390 Hb_000836_390 Hb_008215_010--Hb_000836_390 Hb_008215_010--Hb_007765_140 Hb_000120_070 Hb_000120_070 Hb_008215_010--Hb_000120_070 Hb_000075_110 Hb_000075_110 Hb_008215_010--Hb_000075_110 Hb_165404_010 Hb_165404_010 Hb_008215_010--Hb_165404_010 Hb_001832_240--Hb_008080_030 Hb_005628_050 Hb_005628_050 Hb_001832_240--Hb_005628_050 Hb_002871_050 Hb_002871_050 Hb_001832_240--Hb_002871_050 Hb_001454_290 Hb_001454_290 Hb_001832_240--Hb_001454_290 Hb_003881_020 Hb_003881_020 Hb_001832_240--Hb_003881_020 Hb_000417_120 Hb_000417_120 Hb_000598_020--Hb_000417_120 Hb_000598_020--Hb_000075_110 Hb_000771_030 Hb_000771_030 Hb_000598_020--Hb_000771_030 Hb_000110_030 Hb_000110_030 Hb_000598_020--Hb_000110_030 Hb_000598_020--Hb_165404_010 Hb_000598_020--Hb_005628_050 Hb_002157_100 Hb_002157_100 Hb_008080_030--Hb_002157_100 Hb_042098_010 Hb_042098_010 Hb_008080_030--Hb_042098_010 Hb_004703_010 Hb_004703_010 Hb_008080_030--Hb_004703_010 Hb_003413_020 Hb_003413_020 Hb_008080_030--Hb_003413_020 Hb_007765_140--Hb_000836_390 Hb_007765_140--Hb_165404_010 Hb_007765_140--Hb_000075_110 Hb_075449_040 Hb_075449_040 Hb_007765_140--Hb_075449_040 Hb_007765_140--Hb_000120_070 Hb_000359_280 Hb_000359_280 Hb_187991_010--Hb_000359_280 Hb_063523_010 Hb_063523_010 Hb_187991_010--Hb_063523_010 Hb_001102_270 Hb_001102_270 Hb_187991_010--Hb_001102_270 Hb_031862_020 Hb_031862_020 Hb_187991_010--Hb_031862_020 Hb_005542_040 Hb_005542_040 Hb_187991_010--Hb_005542_040 Hb_000008_080 Hb_000008_080 Hb_187991_010--Hb_000008_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0504206 10.4415 8.07469 3.7802 0.0541581 0.0126818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.7943 0.703555

CAGE analysis