Hb_000046_610

Information

Type -
Description -
Location Contig46: 470847-472323
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_011008714.1
description PREDICTED: putative cullin-like protein 2 isoform X3 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A072UU63
description Cullin-like protein, putative OS=Medicago truncatula GN=MTR_4g131905 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_610 0.0 - - PREDICTED: putative cullin-like protein 2 isoform X3 [Populus euphratica]
2 Hb_056101_010 0.1695730106 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
3 Hb_025526_010 0.1736491116 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
4 Hb_010761_030 0.1767085616 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000661_230 0.1774188532 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
6 Hb_000230_230 0.1774900251 - - hydrolase, putative [Ricinus communis]
7 Hb_000317_220 0.1811566705 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000811_010 0.1838230321 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF118 [Jatropha curcas]
9 Hb_130563_010 0.1841196659 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
10 Hb_008692_020 0.1854746501 - - -
11 Hb_001136_030 0.1862722836 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
12 Hb_000412_060 0.1872828881 - - hypothetical protein JCGZ_18814 [Jatropha curcas]
13 Hb_006788_150 0.1887291118 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001519_240 0.1929447669 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_001377_010 0.1930255344 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
16 Hb_004310_170 0.1933351295 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
17 Hb_004128_090 0.1952302097 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
18 Hb_000816_020 0.1962645047 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
19 Hb_135554_010 0.1967833988 - - Insulin-degrading enzyme, putative [Ricinus communis]
20 Hb_001558_030 0.1969874929 - - phosphofructokinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000046_610 Hb_000046_610 Hb_056101_010 Hb_056101_010 Hb_000046_610--Hb_056101_010 Hb_025526_010 Hb_025526_010 Hb_000046_610--Hb_025526_010 Hb_010761_030 Hb_010761_030 Hb_000046_610--Hb_010761_030 Hb_000661_230 Hb_000661_230 Hb_000046_610--Hb_000661_230 Hb_000230_230 Hb_000230_230 Hb_000046_610--Hb_000230_230 Hb_000317_220 Hb_000317_220 Hb_000046_610--Hb_000317_220 Hb_056101_010--Hb_025526_010 Hb_000575_110 Hb_000575_110 Hb_056101_010--Hb_000575_110 Hb_004881_060 Hb_004881_060 Hb_056101_010--Hb_004881_060 Hb_000422_020 Hb_000422_020 Hb_056101_010--Hb_000422_020 Hb_005116_010 Hb_005116_010 Hb_056101_010--Hb_005116_010 Hb_009486_100 Hb_009486_100 Hb_056101_010--Hb_009486_100 Hb_006788_150 Hb_006788_150 Hb_025526_010--Hb_006788_150 Hb_025526_010--Hb_000661_230 Hb_025526_010--Hb_000422_020 Hb_025526_010--Hb_004881_060 Hb_003060_080 Hb_003060_080 Hb_025526_010--Hb_003060_080 Hb_031931_030 Hb_031931_030 Hb_010761_030--Hb_031931_030 Hb_008692_020 Hb_008692_020 Hb_010761_030--Hb_008692_020 Hb_002870_010 Hb_002870_010 Hb_010761_030--Hb_002870_010 Hb_002566_010 Hb_002566_010 Hb_010761_030--Hb_002566_010 Hb_029769_010 Hb_029769_010 Hb_010761_030--Hb_029769_010 Hb_001136_030 Hb_001136_030 Hb_010761_030--Hb_001136_030 Hb_000661_230--Hb_006788_150 Hb_006970_100 Hb_006970_100 Hb_000661_230--Hb_006970_100 Hb_000661_230--Hb_003060_080 Hb_003085_080 Hb_003085_080 Hb_000661_230--Hb_003085_080 Hb_029576_080 Hb_029576_080 Hb_000661_230--Hb_029576_080 Hb_001104_200 Hb_001104_200 Hb_000230_230--Hb_001104_200 Hb_000230_230--Hb_025526_010 Hb_000230_230--Hb_006788_150 Hb_031042_030 Hb_031042_030 Hb_000230_230--Hb_031042_030 Hb_008768_010 Hb_008768_010 Hb_000230_230--Hb_008768_010 Hb_000580_070 Hb_000580_070 Hb_000230_230--Hb_000580_070 Hb_000236_050 Hb_000236_050 Hb_000317_220--Hb_000236_050 Hb_175758_010 Hb_175758_010 Hb_000317_220--Hb_175758_010 Hb_001329_110 Hb_001329_110 Hb_000317_220--Hb_001329_110 Hb_005237_040 Hb_005237_040 Hb_000317_220--Hb_005237_040 Hb_009785_010 Hb_009785_010 Hb_000317_220--Hb_009785_010 Hb_000011_120 Hb_000011_120 Hb_000317_220--Hb_000011_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.251684 0.126776 0.352501 0 0.0550652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.061564 0.0484119 0 1.38809 0.489137

CAGE analysis