Hb_000046_620

Information

Type -
Description -
Location Contig46: 474455-477460
Sequence    

Annotation

kegg
ID rcu:RCOM_0238060
description Potassium transporter, putative
nr
ID XP_012069364.1
description PREDICTED: potassium transporter 5-like [Jatropha curcas]
swissprot
ID Q9M7K4
description Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1
trembl
ID B9SQ92
description Potassium transporter OS=Ricinus communis GN=RCOM_0238060 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_620 0.0 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
2 Hb_001863_420 0.1754208013 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
3 Hb_138455_010 0.1842941551 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_012053_010 0.186667402 - - srpk, putative [Ricinus communis]
5 Hb_027337_120 0.1912785255 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
6 Hb_058143_010 0.1979604993 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
7 Hb_001511_140 0.1998998509 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
8 Hb_004942_020 0.2000738187 - - Potassium transporter, putative [Ricinus communis]
9 Hb_001776_170 0.212021614 - - conserved hypothetical protein [Ricinus communis]
10 Hb_027892_040 0.2124539713 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
11 Hb_000045_210 0.2147238791 - - -
12 Hb_141194_010 0.21693727 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
13 Hb_002105_030 0.2175983139 - - -
14 Hb_012053_050 0.2179521783 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
15 Hb_007904_170 0.2191219015 - - PREDICTED: anther-specific protein BCP1 [Jatropha curcas]
16 Hb_001396_090 0.2216459562 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
17 Hb_000589_160 0.2242306421 - - PREDICTED: expansin-A4 [Jatropha curcas]
18 Hb_004162_180 0.2247967089 - - zinc finger protein, putative [Ricinus communis]
19 Hb_012053_040 0.2255167648 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
20 Hb_002478_020 0.2278732822 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]

Gene co-expression network

sample Hb_000046_620 Hb_000046_620 Hb_001863_420 Hb_001863_420 Hb_000046_620--Hb_001863_420 Hb_138455_010 Hb_138455_010 Hb_000046_620--Hb_138455_010 Hb_012053_010 Hb_012053_010 Hb_000046_620--Hb_012053_010 Hb_027337_120 Hb_027337_120 Hb_000046_620--Hb_027337_120 Hb_058143_010 Hb_058143_010 Hb_000046_620--Hb_058143_010 Hb_001511_140 Hb_001511_140 Hb_000046_620--Hb_001511_140 Hb_002918_140 Hb_002918_140 Hb_001863_420--Hb_002918_140 Hb_001386_050 Hb_001386_050 Hb_001863_420--Hb_001386_050 Hb_001159_200 Hb_001159_200 Hb_001863_420--Hb_001159_200 Hb_002105_030 Hb_002105_030 Hb_001863_420--Hb_002105_030 Hb_001369_400 Hb_001369_400 Hb_001863_420--Hb_001369_400 Hb_003086_060 Hb_003086_060 Hb_001863_420--Hb_003086_060 Hb_000816_230 Hb_000816_230 Hb_138455_010--Hb_000816_230 Hb_138455_010--Hb_012053_010 Hb_138455_010--Hb_002105_030 Hb_012053_050 Hb_012053_050 Hb_138455_010--Hb_012053_050 Hb_000878_020 Hb_000878_020 Hb_138455_010--Hb_000878_020 Hb_138455_010--Hb_001386_050 Hb_012053_010--Hb_002105_030 Hb_002344_070 Hb_002344_070 Hb_012053_010--Hb_002344_070 Hb_012053_010--Hb_000878_020 Hb_003540_200 Hb_003540_200 Hb_012053_010--Hb_003540_200 Hb_001266_030 Hb_001266_030 Hb_012053_010--Hb_001266_030 Hb_000110_170 Hb_000110_170 Hb_012053_010--Hb_000110_170 Hb_000042_100 Hb_000042_100 Hb_027337_120--Hb_000042_100 Hb_002150_050 Hb_002150_050 Hb_027337_120--Hb_002150_050 Hb_000589_160 Hb_000589_160 Hb_027337_120--Hb_000589_160 Hb_000033_040 Hb_000033_040 Hb_027337_120--Hb_000033_040 Hb_007426_050 Hb_007426_050 Hb_027337_120--Hb_007426_050 Hb_000352_160 Hb_000352_160 Hb_027337_120--Hb_000352_160 Hb_004942_020 Hb_004942_020 Hb_058143_010--Hb_004942_020 Hb_000352_180 Hb_000352_180 Hb_058143_010--Hb_000352_180 Hb_010589_050 Hb_010589_050 Hb_058143_010--Hb_010589_050 Hb_012586_020 Hb_012586_020 Hb_058143_010--Hb_012586_020 Hb_002478_020 Hb_002478_020 Hb_058143_010--Hb_002478_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_000788_080 Hb_000788_080 Hb_001511_140--Hb_000788_080 Hb_001776_170 Hb_001776_170 Hb_001511_140--Hb_001776_170 Hb_000979_250 Hb_000979_250 Hb_001511_140--Hb_000979_250 Hb_012053_040 Hb_012053_040 Hb_001511_140--Hb_012053_040 Hb_002759_240 Hb_002759_240 Hb_001511_140--Hb_002759_240 Hb_000592_060 Hb_000592_060 Hb_001511_140--Hb_000592_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00726962 0.02395 0.00567004 0.00546037 0.0286347 0.00635291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0824691 0.467244 0.198195 0.0154551 0.0552536

CAGE analysis