Hb_000047_010

Information

Type -
Description -
Location Contig47: 19415-21711
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14350g
description POPTRDRAFT_832983; expansin-like family protein
nr
ID XP_012069316.1
description PREDICTED: expansin-like A1 [Jatropha curcas]
swissprot
ID Q9LZT4
description Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1
trembl
ID A0A067KZN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03948 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-like a2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44199: 18839-21774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000047_010 0.0 - - PREDICTED: expansin-like A1 [Jatropha curcas]
2 Hb_000892_030 0.073691361 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_000418_060 0.0776858803 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
4 Hb_006002_020 0.0885672092 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
5 Hb_004109_110 0.0934563023 - - dioxygenase family protein [Populus trichocarpa]
6 Hb_002400_040 0.1074663162 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
7 Hb_006153_020 0.1093869911 - - vacuolar invertase [Manihot esculenta]
8 Hb_094437_050 0.1152989765 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
9 Hb_002725_080 0.1178517397 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_001019_020 0.1194514322 - - conserved hypothetical protein [Ricinus communis]
11 Hb_021576_160 0.124083381 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
12 Hb_001518_030 0.1240869512 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_001610_070 0.1242973308 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
14 Hb_001254_020 0.1251891149 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
15 Hb_010417_110 0.1286904077 - - conserved hypothetical protein [Ricinus communis]
16 Hb_024650_010 0.1291151691 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
17 Hb_001221_050 0.1310628327 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
18 Hb_000024_020 0.1324720297 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
19 Hb_011915_020 0.1335707785 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
20 Hb_001247_160 0.1359196694 - - s-adenosylmethionine synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000047_010 Hb_000047_010 Hb_000892_030 Hb_000892_030 Hb_000047_010--Hb_000892_030 Hb_000418_060 Hb_000418_060 Hb_000047_010--Hb_000418_060 Hb_006002_020 Hb_006002_020 Hb_000047_010--Hb_006002_020 Hb_004109_110 Hb_004109_110 Hb_000047_010--Hb_004109_110 Hb_002400_040 Hb_002400_040 Hb_000047_010--Hb_002400_040 Hb_006153_020 Hb_006153_020 Hb_000047_010--Hb_006153_020 Hb_094437_050 Hb_094437_050 Hb_000892_030--Hb_094437_050 Hb_005725_280 Hb_005725_280 Hb_000892_030--Hb_005725_280 Hb_005694_150 Hb_005694_150 Hb_000892_030--Hb_005694_150 Hb_000365_340 Hb_000365_340 Hb_000892_030--Hb_000365_340 Hb_000892_030--Hb_002400_040 Hb_000418_060--Hb_006002_020 Hb_001254_020 Hb_001254_020 Hb_000418_060--Hb_001254_020 Hb_000319_010 Hb_000319_010 Hb_000418_060--Hb_000319_010 Hb_011915_020 Hb_011915_020 Hb_000418_060--Hb_011915_020 Hb_002783_130 Hb_002783_130 Hb_000418_060--Hb_002783_130 Hb_006002_020--Hb_006153_020 Hb_002725_080 Hb_002725_080 Hb_006002_020--Hb_002725_080 Hb_006002_020--Hb_004109_110 Hb_010417_110 Hb_010417_110 Hb_006002_020--Hb_010417_110 Hb_004109_110--Hb_006153_020 Hb_021576_160 Hb_021576_160 Hb_004109_110--Hb_021576_160 Hb_001518_030 Hb_001518_030 Hb_004109_110--Hb_001518_030 Hb_024650_010 Hb_024650_010 Hb_004109_110--Hb_024650_010 Hb_005408_080 Hb_005408_080 Hb_002400_040--Hb_005408_080 Hb_002400_040--Hb_094437_050 Hb_182970_010 Hb_182970_010 Hb_002400_040--Hb_182970_010 Hb_002400_040--Hb_004109_110 Hb_001221_050 Hb_001221_050 Hb_006153_020--Hb_001221_050 Hb_005946_200 Hb_005946_200 Hb_006153_020--Hb_005946_200 Hb_006153_020--Hb_021576_160 Hb_001333_030 Hb_001333_030 Hb_006153_020--Hb_001333_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09236 146.306 99.2845 142.581 1.75745 0.415157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.91949 2.3722 0.790444 6.23681 43.2069

CAGE analysis