Hb_000048_020

Information

Type -
Description -
Location Contig48: 50120-54338
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000048_020 0.0 - - -
2 Hb_001232_120 0.2276258835 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
3 Hb_004525_060 0.2628413304 - - -
4 Hb_008289_050 0.2851553053 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
5 Hb_021943_030 0.2908147351 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_010288_040 0.2952362738 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
7 Hb_027472_230 0.3069339083 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
8 Hb_001720_060 0.310108828 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
9 Hb_009393_170 0.3128486976 - - PREDICTED: vestitone reductase-like [Jatropha curcas]
10 Hb_004195_180 0.3128914129 - - unnamed protein product [Coffea canephora]
11 Hb_026747_020 0.316336691 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_001504_120 0.3200117386 - - -
13 Hb_007382_050 0.332556514 - - PREDICTED: uncharacterized protein LOC105645009 [Jatropha curcas]
14 Hb_003398_030 0.3374705608 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
15 Hb_002273_060 0.3394519664 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000829_080 0.3436221237 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
17 Hb_000317_360 0.3479307884 - - PREDICTED: GDSL esterase/lipase At5g08460 [Jatropha curcas]
18 Hb_003994_170 0.3507625578 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
19 Hb_000454_060 0.3511381044 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
20 Hb_140049_050 0.3514001189 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]

Gene co-expression network

sample Hb_000048_020 Hb_000048_020 Hb_001232_120 Hb_001232_120 Hb_000048_020--Hb_001232_120 Hb_004525_060 Hb_004525_060 Hb_000048_020--Hb_004525_060 Hb_008289_050 Hb_008289_050 Hb_000048_020--Hb_008289_050 Hb_021943_030 Hb_021943_030 Hb_000048_020--Hb_021943_030 Hb_010288_040 Hb_010288_040 Hb_000048_020--Hb_010288_040 Hb_027472_230 Hb_027472_230 Hb_000048_020--Hb_027472_230 Hb_026747_020 Hb_026747_020 Hb_001232_120--Hb_026747_020 Hb_003994_170 Hb_003994_170 Hb_001232_120--Hb_003994_170 Hb_001232_120--Hb_004525_060 Hb_012807_010 Hb_012807_010 Hb_001232_120--Hb_012807_010 Hb_000107_640 Hb_000107_640 Hb_001232_120--Hb_000107_640 Hb_000454_060 Hb_000454_060 Hb_004525_060--Hb_000454_060 Hb_009780_080 Hb_009780_080 Hb_004525_060--Hb_009780_080 Hb_004525_060--Hb_010288_040 Hb_096224_020 Hb_096224_020 Hb_004525_060--Hb_096224_020 Hb_132998_020 Hb_132998_020 Hb_004525_060--Hb_132998_020 Hb_008289_050--Hb_027472_230 Hb_004195_180 Hb_004195_180 Hb_008289_050--Hb_004195_180 Hb_001720_060 Hb_001720_060 Hb_008289_050--Hb_001720_060 Hb_003398_030 Hb_003398_030 Hb_008289_050--Hb_003398_030 Hb_001085_100 Hb_001085_100 Hb_008289_050--Hb_001085_100 Hb_000077_240 Hb_000077_240 Hb_008289_050--Hb_000077_240 Hb_000317_360 Hb_000317_360 Hb_021943_030--Hb_000317_360 Hb_008479_020 Hb_008479_020 Hb_021943_030--Hb_008479_020 Hb_009813_080 Hb_009813_080 Hb_021943_030--Hb_009813_080 Hb_000359_240 Hb_000359_240 Hb_021943_030--Hb_000359_240 Hb_002311_170 Hb_002311_170 Hb_021943_030--Hb_002311_170 Hb_004732_010 Hb_004732_010 Hb_010288_040--Hb_004732_010 Hb_005779_050 Hb_005779_050 Hb_010288_040--Hb_005779_050 Hb_007105_010 Hb_007105_010 Hb_010288_040--Hb_007105_010 Hb_002180_010 Hb_002180_010 Hb_010288_040--Hb_002180_010 Hb_010288_040--Hb_000454_060 Hb_006907_120 Hb_006907_120 Hb_010288_040--Hb_006907_120 Hb_027472_230--Hb_004195_180 Hb_027472_230--Hb_001720_060 Hb_001832_020 Hb_001832_020 Hb_027472_230--Hb_001832_020 Hb_000390_260 Hb_000390_260 Hb_027472_230--Hb_000390_260 Hb_027472_230--Hb_001085_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.271659 0 0 0 0.137768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122901 0.193126 0 0.279672 0

CAGE analysis