Hb_000048_050

Information

Type -
Description -
Location Contig48: 83010-85211
Sequence    

Annotation

kegg
ID rcu:RCOM_0399790
description hypothetical protein
nr
ID XP_012072564.1
description PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
swissprot
ID Q9LM55
description F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1
trembl
ID A0A067KNW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05355 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44665: 83828-84351 , PASA_asmbl_44666: 84712-85422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000048_050 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
2 Hb_001473_130 0.0852108772 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
3 Hb_002352_010 0.0942508165 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
4 Hb_084849_020 0.0960013993 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_001369_050 0.1003293224 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
6 Hb_002025_320 0.1017139451 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
7 Hb_004899_320 0.1020642684 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
8 Hb_002326_030 0.1020714692 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
9 Hb_023226_010 0.1026760697 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
10 Hb_000836_070 0.1027516881 - - protein binding protein, putative [Ricinus communis]
11 Hb_002749_100 0.1039151789 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
12 Hb_001718_100 0.1045708161 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
13 Hb_071736_020 0.1062837771 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
14 Hb_008311_010 0.1072979673 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
15 Hb_001609_030 0.1077330541 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
16 Hb_007047_010 0.1087995079 - - PREDICTED: expansin-A13 [Jatropha curcas]
17 Hb_002026_190 0.1090851856 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
18 Hb_011161_040 0.1091843589 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
19 Hb_001427_120 0.1107969462 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
20 Hb_001366_200 0.1115539399 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000048_050 Hb_000048_050 Hb_001473_130 Hb_001473_130 Hb_000048_050--Hb_001473_130 Hb_002352_010 Hb_002352_010 Hb_000048_050--Hb_002352_010 Hb_084849_020 Hb_084849_020 Hb_000048_050--Hb_084849_020 Hb_001369_050 Hb_001369_050 Hb_000048_050--Hb_001369_050 Hb_002025_320 Hb_002025_320 Hb_000048_050--Hb_002025_320 Hb_004899_320 Hb_004899_320 Hb_000048_050--Hb_004899_320 Hb_001473_130--Hb_002025_320 Hb_000983_100 Hb_000983_100 Hb_001473_130--Hb_000983_100 Hb_001473_130--Hb_002352_010 Hb_002326_030 Hb_002326_030 Hb_001473_130--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_001473_130--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_001473_130--Hb_000427_110 Hb_002352_010--Hb_002527_070 Hb_002352_010--Hb_000427_110 Hb_001677_110 Hb_001677_110 Hb_002352_010--Hb_001677_110 Hb_002352_010--Hb_002326_030 Hb_012522_030 Hb_012522_030 Hb_002352_010--Hb_012522_030 Hb_084849_020--Hb_001369_050 Hb_001718_100 Hb_001718_100 Hb_084849_020--Hb_001718_100 Hb_005686_110 Hb_005686_110 Hb_084849_020--Hb_005686_110 Hb_003050_230 Hb_003050_230 Hb_084849_020--Hb_003050_230 Hb_001427_120 Hb_001427_120 Hb_084849_020--Hb_001427_120 Hb_000362_210 Hb_000362_210 Hb_084849_020--Hb_000362_210 Hb_001369_050--Hb_005686_110 Hb_001235_070 Hb_001235_070 Hb_001369_050--Hb_001235_070 Hb_001369_050--Hb_001718_100 Hb_092100_020 Hb_092100_020 Hb_001369_050--Hb_092100_020 Hb_001369_050--Hb_003050_230 Hb_002025_320--Hb_001427_120 Hb_000152_140 Hb_000152_140 Hb_002025_320--Hb_000152_140 Hb_002025_320--Hb_001718_100 Hb_002025_320--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_002025_320--Hb_000956_010 Hb_005488_010 Hb_005488_010 Hb_004899_320--Hb_005488_010 Hb_000836_070 Hb_000836_070 Hb_004899_320--Hb_000836_070 Hb_006693_030 Hb_006693_030 Hb_004899_320--Hb_006693_030 Hb_001366_200 Hb_001366_200 Hb_004899_320--Hb_001366_200 Hb_004899_320--Hb_000956_010 Hb_000329_040 Hb_000329_040 Hb_004899_320--Hb_000329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.8222 9.91714 6.57979 18.5143 29.6124 96.6559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.2924 75.0238 93.5078 13.7501 11.3925

CAGE analysis