Hb_000048_100

Information

Type -
Description -
Location Contig48: 190371-192724
Sequence    

Annotation

kegg
ID rcu:RCOM_1438250
description hypothetical protein
nr
ID XP_002512667.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFZ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1438250 PE=4 SV=1
Gene Ontology
ID GO:0043229
description histone-lysine n- h3 lysine-9 specific suvh4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000048_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_030765_010 0.1397175677 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
3 Hb_004586_450 0.1555666307 - - -
4 Hb_000562_080 0.18431499 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007574_060 0.1863900124 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
6 Hb_056768_010 0.1883039929 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
7 Hb_000348_040 0.1910871305 - - -
8 Hb_001405_130 0.1962566119 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
9 Hb_000048_090 0.1981063636 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
10 Hb_188382_010 0.1996681171 - - Ran GTPase binding protein, putative [Ricinus communis]
11 Hb_162999_010 0.2057186227 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_006501_030 0.2075123967 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
13 Hb_008442_010 0.209830237 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
14 Hb_000832_240 0.2235655697 - - conserved hypothetical protein [Ricinus communis]
15 Hb_121550_010 0.2248097887 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004502_050 0.2300885101 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
17 Hb_000086_330 0.2303919172 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
18 Hb_029982_010 0.2352931953 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
19 Hb_126398_010 0.2386030376 - - -
20 Hb_027472_030 0.2434564437 - - RNA helicase 36, partial [Manihot esculenta]

Gene co-expression network

sample Hb_000048_100 Hb_000048_100 Hb_030765_010 Hb_030765_010 Hb_000048_100--Hb_030765_010 Hb_004586_450 Hb_004586_450 Hb_000048_100--Hb_004586_450 Hb_000562_080 Hb_000562_080 Hb_000048_100--Hb_000562_080 Hb_007574_060 Hb_007574_060 Hb_000048_100--Hb_007574_060 Hb_056768_010 Hb_056768_010 Hb_000048_100--Hb_056768_010 Hb_000348_040 Hb_000348_040 Hb_000048_100--Hb_000348_040 Hb_188382_010 Hb_188382_010 Hb_030765_010--Hb_188382_010 Hb_001186_050 Hb_001186_050 Hb_030765_010--Hb_001186_050 Hb_000086_330 Hb_000086_330 Hb_030765_010--Hb_000086_330 Hb_030765_010--Hb_000348_040 Hb_000736_010 Hb_000736_010 Hb_030765_010--Hb_000736_010 Hb_004586_450--Hb_056768_010 Hb_001057_050 Hb_001057_050 Hb_004586_450--Hb_001057_050 Hb_004586_450--Hb_000562_080 Hb_001047_140 Hb_001047_140 Hb_004586_450--Hb_001047_140 Hb_029888_020 Hb_029888_020 Hb_004586_450--Hb_029888_020 Hb_001405_130 Hb_001405_130 Hb_000562_080--Hb_001405_130 Hb_004502_080 Hb_004502_080 Hb_000562_080--Hb_004502_080 Hb_000562_080--Hb_029888_020 Hb_000562_080--Hb_188382_010 Hb_008557_020 Hb_008557_020 Hb_000562_080--Hb_008557_020 Hb_163413_010 Hb_163413_010 Hb_007574_060--Hb_163413_010 Hb_007574_060--Hb_001405_130 Hb_000832_240 Hb_000832_240 Hb_007574_060--Hb_000832_240 Hb_008442_010 Hb_008442_010 Hb_007574_060--Hb_008442_010 Hb_007574_060--Hb_000348_040 Hb_029982_010 Hb_029982_010 Hb_056768_010--Hb_029982_010 Hb_008667_050 Hb_008667_050 Hb_056768_010--Hb_008667_050 Hb_078604_010 Hb_078604_010 Hb_056768_010--Hb_078604_010 Hb_005690_020 Hb_005690_020 Hb_056768_010--Hb_005690_020 Hb_006501_030 Hb_006501_030 Hb_000348_040--Hb_006501_030 Hb_004297_030 Hb_004297_030 Hb_000348_040--Hb_004297_030 Hb_015091_010 Hb_015091_010 Hb_000348_040--Hb_015091_010 Hb_063511_010 Hb_063511_010 Hb_000348_040--Hb_063511_010 Hb_088496_010 Hb_088496_010 Hb_000348_040--Hb_088496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186617 0.0629199 0.0234534 0.0588336 0.175077 1.52045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28962 1.07029 0 0 0

CAGE analysis