Hb_000048_120

Information

Type -
Description -
Location Contig48: 236999-242064
Sequence    

Annotation

kegg
ID pop:POPTR_0012s04750g
description POPTRDRAFT_823276; hypothetical protein
nr
ID XP_012072573.1
description PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9I2H2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s04750g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000048_120 0.0 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
2 Hb_125152_010 0.0013346774 - - Ankyrin repeat family protein, putative [Theobroma cacao]
3 Hb_000629_140 0.0239751014 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
4 Hb_009501_010 0.0395141729 - - Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_001998_160 0.059831133 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
6 Hb_137821_010 0.0736611845 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
7 Hb_002217_480 0.0746353189 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
8 Hb_005694_140 0.0750686122 - - protein with unknown function [Ricinus communis]
9 Hb_000318_070 0.0761111855 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
10 Hb_000527_090 0.0802645636 - - serine carboxypeptidase, putative [Ricinus communis]
11 Hb_116486_010 0.0811512682 - - MADS-box transcription factor, partial [Sapria himalayana]
12 Hb_170674_020 0.0818371182 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
13 Hb_013399_040 0.0905076664 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
14 Hb_000327_050 0.096973417 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
15 Hb_002105_070 0.099435442 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002820_100 0.1018935082 - - hypothetical protein OsI_33031 [Oryza sativa Indica Group]
17 Hb_005463_120 0.1028706959 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_002304_120 0.1042231567 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003747_080 0.1060056815 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
20 Hb_041067_010 0.1090818348 - - hypothetical protein JCGZ_00780 [Jatropha curcas]

Gene co-expression network

sample Hb_000048_120 Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_000048_120--Hb_125152_010 Hb_000629_140 Hb_000629_140 Hb_000048_120--Hb_000629_140 Hb_009501_010 Hb_009501_010 Hb_000048_120--Hb_009501_010 Hb_001998_160 Hb_001998_160 Hb_000048_120--Hb_001998_160 Hb_137821_010 Hb_137821_010 Hb_000048_120--Hb_137821_010 Hb_002217_480 Hb_002217_480 Hb_000048_120--Hb_002217_480 Hb_125152_010--Hb_000629_140 Hb_125152_010--Hb_009501_010 Hb_125152_010--Hb_001998_160 Hb_125152_010--Hb_002217_480 Hb_125152_010--Hb_137821_010 Hb_005694_140 Hb_005694_140 Hb_000629_140--Hb_005694_140 Hb_116486_010 Hb_116486_010 Hb_000629_140--Hb_116486_010 Hb_000629_140--Hb_009501_010 Hb_000629_140--Hb_137821_010 Hb_009501_010--Hb_001998_160 Hb_000318_070 Hb_000318_070 Hb_009501_010--Hb_000318_070 Hb_170674_020 Hb_170674_020 Hb_009501_010--Hb_170674_020 Hb_009501_010--Hb_002217_480 Hb_001998_160--Hb_000318_070 Hb_001998_160--Hb_170674_020 Hb_013399_040 Hb_013399_040 Hb_001998_160--Hb_013399_040 Hb_001998_160--Hb_002217_480 Hb_000327_050 Hb_000327_050 Hb_001998_160--Hb_000327_050 Hb_003747_080 Hb_003747_080 Hb_137821_010--Hb_003747_080 Hb_005463_120 Hb_005463_120 Hb_137821_010--Hb_005463_120 Hb_000527_090 Hb_000527_090 Hb_137821_010--Hb_000527_090 Hb_002217_480--Hb_000318_070 Hb_002217_480--Hb_170674_020 Hb_002217_480--Hb_013399_040 Hb_004148_030 Hb_004148_030 Hb_002217_480--Hb_004148_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.021812 0 0.289434 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis