Hb_000048_140

Information

Type -
Description -
Location Contig48: 271665-287607
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09060g
description hypothetical protein
nr
ID XP_012072559.1
description PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
swissprot
ID P15170
description Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1
trembl
ID A0A067KNV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05350 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic peptide chain release factor gtp-binding subunit erf3a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44672: 271611-287578
cDNA
(Sanger)
(ID:Location)		 030_I20.ab1: 278081-287578

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000048_140 0.0 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
2 Hb_028639_010 0.0482403434 - - transporter, putative [Ricinus communis]
3 Hb_002200_130 0.0682766394 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
4 Hb_000034_050 0.0719715708 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
5 Hb_003362_040 0.0723849524 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
6 Hb_007407_040 0.0735930011 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_000230_330 0.0757504332 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
8 Hb_009535_020 0.0820026645 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
9 Hb_001584_110 0.0825270264 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
10 Hb_003434_060 0.0828832816 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
11 Hb_009627_010 0.0839452128 - - Protein dom-3, putative [Ricinus communis]
12 Hb_000173_510 0.0843583117 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
13 Hb_005883_050 0.0851796772 - - PREDICTED: transportin-3 [Jatropha curcas]
14 Hb_000915_050 0.0854734266 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000436_040 0.0861502811 - - PREDICTED: transportin-1 [Jatropha curcas]
16 Hb_000390_060 0.0866007082 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
17 Hb_002255_050 0.0873458272 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_123777_030 0.0884504229 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
19 Hb_000059_150 0.0885451551 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
20 Hb_000244_250 0.0886644494 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000048_140 Hb_000048_140 Hb_028639_010 Hb_028639_010 Hb_000048_140--Hb_028639_010 Hb_002200_130 Hb_002200_130 Hb_000048_140--Hb_002200_130 Hb_000034_050 Hb_000034_050 Hb_000048_140--Hb_000034_050 Hb_003362_040 Hb_003362_040 Hb_000048_140--Hb_003362_040 Hb_007407_040 Hb_007407_040 Hb_000048_140--Hb_007407_040 Hb_000230_330 Hb_000230_330 Hb_000048_140--Hb_000230_330 Hb_009535_020 Hb_009535_020 Hb_028639_010--Hb_009535_020 Hb_028639_010--Hb_002200_130 Hb_003090_080 Hb_003090_080 Hb_028639_010--Hb_003090_080 Hb_000600_070 Hb_000600_070 Hb_028639_010--Hb_000600_070 Hb_000173_510 Hb_000173_510 Hb_028639_010--Hb_000173_510 Hb_000207_390 Hb_000207_390 Hb_002200_130--Hb_000207_390 Hb_002200_130--Hb_003362_040 Hb_001301_200 Hb_001301_200 Hb_002200_130--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_002200_130--Hb_001797_050 Hb_002400_180 Hb_002400_180 Hb_000034_050--Hb_002400_180 Hb_000322_100 Hb_000322_100 Hb_000034_050--Hb_000322_100 Hb_009265_080 Hb_009265_080 Hb_000034_050--Hb_009265_080 Hb_001863_110 Hb_001863_110 Hb_000034_050--Hb_001863_110 Hb_003581_120 Hb_003581_120 Hb_000034_050--Hb_003581_120 Hb_000390_060 Hb_000390_060 Hb_000034_050--Hb_000390_060 Hb_000915_050 Hb_000915_050 Hb_003362_040--Hb_000915_050 Hb_000244_250 Hb_000244_250 Hb_003362_040--Hb_000244_250 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_009627_010 Hb_009627_010 Hb_003362_040--Hb_009627_010 Hb_003362_040--Hb_000034_050 Hb_001366_040 Hb_001366_040 Hb_007407_040--Hb_001366_040 Hb_004195_280 Hb_004195_280 Hb_007407_040--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_007407_040--Hb_000179_020 Hb_001504_160 Hb_001504_160 Hb_007407_040--Hb_001504_160 Hb_007407_040--Hb_003362_040 Hb_001584_110 Hb_001584_110 Hb_000230_330--Hb_001584_110 Hb_000230_330--Hb_000390_060 Hb_000230_330--Hb_001504_160 Hb_000462_150 Hb_000462_150 Hb_000230_330--Hb_000462_150 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
134.187 52.5243 38.6332 62.9 162.03 204.58
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.1547 45.6815 105.1 70.5965 46.8956

CAGE analysis