Hb_000049_020

Information

Type -
Description -
Location Contig49: 4977-11262
Sequence    

Annotation

kegg
ID rcu:RCOM_0542300
description Ras-GTPase-activating protein-binding protein, putative
nr
ID XP_002526545.1
description Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
swissprot
ID O94260
description Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1
trembl
ID B9SKM6
description Ras-GTPase-activating protein-binding protein, putative OS=Ricinus communis GN=RCOM_0542300 PE=4 SV=1
Gene Ontology
ID GO:0005622
description g3bp-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45235: 5059-11074 , PASA_asmbl_45236: 7460-7719
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_020 0.0 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
2 Hb_000300_270 0.0506830757 - - cationic amino acid transporter, putative [Ricinus communis]
3 Hb_000345_160 0.053692412 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
4 Hb_000256_150 0.0554533317 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
5 Hb_004102_170 0.0611180699 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
6 Hb_002883_030 0.0658001126 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
7 Hb_000215_300 0.0674480404 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
8 Hb_004452_110 0.0676611824 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
9 Hb_008511_020 0.0689610401 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
10 Hb_003581_200 0.070259373 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
11 Hb_011310_110 0.0707734087 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
12 Hb_009569_040 0.0716849948 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
13 Hb_000787_160 0.0726339298 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
14 Hb_004705_170 0.0752192677 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
15 Hb_005977_100 0.0752617186 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
16 Hb_086063_020 0.0758536062 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
17 Hb_005650_010 0.0763864627 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001876_040 0.0782896384 - - PREDICTED: mucin-5B [Jatropha curcas]
19 Hb_003498_080 0.0784314525 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
20 Hb_001662_100 0.0784475744 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000049_020 Hb_000049_020 Hb_000300_270 Hb_000300_270 Hb_000049_020--Hb_000300_270 Hb_000345_160 Hb_000345_160 Hb_000049_020--Hb_000345_160 Hb_000256_150 Hb_000256_150 Hb_000049_020--Hb_000256_150 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_002883_030 Hb_002883_030 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_002046_160 Hb_002046_160 Hb_000300_270--Hb_002046_160 Hb_000300_270--Hb_000256_150 Hb_000300_270--Hb_002883_030 Hb_004452_110 Hb_004452_110 Hb_000300_270--Hb_004452_110 Hb_000300_270--Hb_000345_160 Hb_004037_020 Hb_004037_020 Hb_000345_160--Hb_004037_020 Hb_004705_170 Hb_004705_170 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_000345_160--Hb_004452_110 Hb_007481_010 Hb_007481_010 Hb_000256_150--Hb_007481_010 Hb_001269_330 Hb_001269_330 Hb_000256_150--Hb_001269_330 Hb_009569_040 Hb_009569_040 Hb_000256_150--Hb_009569_040 Hb_000256_150--Hb_004452_110 Hb_000787_160 Hb_000787_160 Hb_004102_170--Hb_000787_160 Hb_000146_040 Hb_000146_040 Hb_004102_170--Hb_000146_040 Hb_004102_170--Hb_000345_160 Hb_001405_210 Hb_001405_210 Hb_004102_170--Hb_001405_210 Hb_005797_010 Hb_005797_010 Hb_004102_170--Hb_005797_010 Hb_002883_030--Hb_000345_160 Hb_002897_090 Hb_002897_090 Hb_002883_030--Hb_002897_090 Hb_001662_100 Hb_001662_100 Hb_002883_030--Hb_001662_100 Hb_002883_030--Hb_004037_020 Hb_000215_300--Hb_004705_170 Hb_086063_020 Hb_086063_020 Hb_000215_300--Hb_086063_020 Hb_000215_300--Hb_000345_160 Hb_000258_110 Hb_000258_110 Hb_000215_300--Hb_000258_110 Hb_000215_300--Hb_004037_020 Hb_007472_070 Hb_007472_070 Hb_000215_300--Hb_007472_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.25039 6.79276 7.53421 14.0805 5.99739 6.57752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.95368 4.80257 5.18315 6.86201 9.80675

CAGE analysis