Hb_000049_050

Information

Type -
Description -
Location Contig49: 22269-26499
Sequence    

Annotation

kegg
ID rcu:RCOM_0542170
description hypothetical protein
nr
ID XP_012085224.1
description PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17621 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45243: 22205-34548 , PASA_asmbl_45244: 24306-36040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_050 0.0 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
2 Hb_138585_040 0.0668348922 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
3 Hb_002631_260 0.0805319285 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
4 Hb_000260_790 0.0894360011 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
5 Hb_000707_020 0.0985002436 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
6 Hb_001172_100 0.0988803986 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
7 Hb_005045_070 0.1036041347 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
8 Hb_000975_230 0.1068250557 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
9 Hb_002324_010 0.1068892087 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
10 Hb_001157_080 0.1087747395 - - zinc finger protein, putative [Ricinus communis]
11 Hb_003291_020 0.1141688963 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
12 Hb_000384_120 0.1169047924 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
13 Hb_000030_200 0.1196109141 - - PREDICTED: early nodulin-93-like [Populus euphratica]
14 Hb_077399_010 0.11981633 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
15 Hb_005278_040 0.1215464122 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
16 Hb_003880_040 0.1215561926 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
17 Hb_000834_030 0.1218556212 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
18 Hb_000574_130 0.1221005081 - - calcineurin-like protein [Hevea brasiliensis]
19 Hb_148209_010 0.1236212799 - - RAS-related GTP-binding family protein [Populus trichocarpa]
20 Hb_005496_090 0.1252518308 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000049_050 Hb_000049_050 Hb_138585_040 Hb_138585_040 Hb_000049_050--Hb_138585_040 Hb_002631_260 Hb_002631_260 Hb_000049_050--Hb_002631_260 Hb_000260_790 Hb_000260_790 Hb_000049_050--Hb_000260_790 Hb_000707_020 Hb_000707_020 Hb_000049_050--Hb_000707_020 Hb_001172_100 Hb_001172_100 Hb_000049_050--Hb_001172_100 Hb_005045_070 Hb_005045_070 Hb_000049_050--Hb_005045_070 Hb_138585_040--Hb_001172_100 Hb_002324_010 Hb_002324_010 Hb_138585_040--Hb_002324_010 Hb_000384_120 Hb_000384_120 Hb_138585_040--Hb_000384_120 Hb_138585_040--Hb_002631_260 Hb_005278_040 Hb_005278_040 Hb_138585_040--Hb_005278_040 Hb_002631_260--Hb_002324_010 Hb_002631_260--Hb_000260_790 Hb_001410_060 Hb_001410_060 Hb_002631_260--Hb_001410_060 Hb_003880_040 Hb_003880_040 Hb_002631_260--Hb_003880_040 Hb_077399_010 Hb_077399_010 Hb_000260_790--Hb_077399_010 Hb_001195_490 Hb_001195_490 Hb_000260_790--Hb_001195_490 Hb_000975_230 Hb_000975_230 Hb_000260_790--Hb_000975_230 Hb_000260_790--Hb_138585_040 Hb_012490_050 Hb_012490_050 Hb_000707_020--Hb_012490_050 Hb_000834_030 Hb_000834_030 Hb_000707_020--Hb_000834_030 Hb_000302_280 Hb_000302_280 Hb_000707_020--Hb_000302_280 Hb_000707_020--Hb_138585_040 Hb_001005_080 Hb_001005_080 Hb_000707_020--Hb_001005_080 Hb_001172_100--Hb_000384_120 Hb_001172_100--Hb_002324_010 Hb_001225_010 Hb_001225_010 Hb_001172_100--Hb_001225_010 Hb_001172_100--Hb_005045_070 Hb_001157_080 Hb_001157_080 Hb_001172_100--Hb_001157_080 Hb_005045_070--Hb_002324_010 Hb_072922_020 Hb_072922_020 Hb_005045_070--Hb_072922_020 Hb_006452_040 Hb_006452_040 Hb_005045_070--Hb_006452_040 Hb_000087_130 Hb_000087_130 Hb_005045_070--Hb_000087_130 Hb_003376_190 Hb_003376_190 Hb_005045_070--Hb_003376_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.90219 2.53145 2.71467 22.4277 1.95482 6.2199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.529 36.6387 17.7568 12.2011 9.09671

CAGE analysis