Hb_000049_060

Information

Type -
Description -
Location Contig49: 34257-34659
Sequence    

Annotation

kegg
ID -
description -
nr
ID AFK49065.1
description unknown [Medicago truncatula]
swissprot
ID -
description -
trembl
ID I3T973
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45243: 22205-34548 , PASA_asmbl_45244: 24306-36040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_060 0.0 - - unknown [Medicago truncatula]
2 Hb_004602_030 0.1387526482 - - histone H4 [Zea mays]
3 Hb_012675_070 0.1475632244 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
4 Hb_005588_070 0.1602629998 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
5 Hb_000493_010 0.1654954416 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
6 Hb_172706_030 0.1667350245 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
7 Hb_001571_110 0.1684829457 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
8 Hb_001638_240 0.1688313206 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
9 Hb_004055_070 0.1751930241 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
10 Hb_000025_240 0.1761149525 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
11 Hb_000152_550 0.1766353074 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
12 Hb_002878_010 0.177001951 - - -
13 Hb_126216_010 0.1773034607 - - PREDICTED: 60S ribosomal protein L9 [Jatropha curcas]
14 Hb_005400_030 0.1780035883 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
15 Hb_000672_120 0.1787217727 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
16 Hb_140543_010 0.1814382743 - - -
17 Hb_005235_030 0.1831920258 - - PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Eucalyptus grandis]
18 Hb_179296_010 0.1840742559 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
19 Hb_016734_070 0.1843888907 - - hypothetical_protein [Oryza brachyantha]
20 Hb_001935_150 0.1857705265 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_000049_060 Hb_000049_060 Hb_004602_030 Hb_004602_030 Hb_000049_060--Hb_004602_030 Hb_012675_070 Hb_012675_070 Hb_000049_060--Hb_012675_070 Hb_005588_070 Hb_005588_070 Hb_000049_060--Hb_005588_070 Hb_000493_010 Hb_000493_010 Hb_000049_060--Hb_000493_010 Hb_172706_030 Hb_172706_030 Hb_000049_060--Hb_172706_030 Hb_001571_110 Hb_001571_110 Hb_000049_060--Hb_001571_110 Hb_004602_030--Hb_005588_070 Hb_004602_030--Hb_172706_030 Hb_004602_030--Hb_012675_070 Hb_140543_010 Hb_140543_010 Hb_004602_030--Hb_140543_010 Hb_002878_010 Hb_002878_010 Hb_004602_030--Hb_002878_010 Hb_012675_070--Hb_005588_070 Hb_002259_160 Hb_002259_160 Hb_012675_070--Hb_002259_160 Hb_000083_170 Hb_000083_170 Hb_012675_070--Hb_000083_170 Hb_003352_040 Hb_003352_040 Hb_012675_070--Hb_003352_040 Hb_037887_010 Hb_037887_010 Hb_012675_070--Hb_037887_010 Hb_005400_030 Hb_005400_030 Hb_012675_070--Hb_005400_030 Hb_004336_050 Hb_004336_050 Hb_005588_070--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_005588_070--Hb_180301_010 Hb_001504_080 Hb_001504_080 Hb_005588_070--Hb_001504_080 Hb_000672_120 Hb_000672_120 Hb_005588_070--Hb_000672_120 Hb_005588_070--Hb_002878_010 Hb_000648_030 Hb_000648_030 Hb_000493_010--Hb_000648_030 Hb_042710_010 Hb_042710_010 Hb_000493_010--Hb_042710_010 Hb_001296_030 Hb_001296_030 Hb_000493_010--Hb_001296_030 Hb_000493_010--Hb_000672_120 Hb_000419_130 Hb_000419_130 Hb_000493_010--Hb_000419_130 Hb_007317_060 Hb_007317_060 Hb_000493_010--Hb_007317_060 Hb_172706_030--Hb_004336_050 Hb_172706_030--Hb_140543_010 Hb_172706_030--Hb_000672_120 Hb_172706_030--Hb_002878_010 Hb_172706_030--Hb_001504_080 Hb_000364_020 Hb_000364_020 Hb_172706_030--Hb_000364_020 Hb_007894_230 Hb_007894_230 Hb_001571_110--Hb_007894_230 Hb_000097_010 Hb_000097_010 Hb_001571_110--Hb_000097_010 Hb_014834_040 Hb_014834_040 Hb_001571_110--Hb_014834_040 Hb_001571_110--Hb_140543_010 Hb_002078_260 Hb_002078_260 Hb_001571_110--Hb_002078_260 Hb_001935_150 Hb_001935_150 Hb_001571_110--Hb_001935_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06514 0.86537 4.52949 6.30924 0.497453 15.1791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5941 20.5245 8.42202 2.40533 4.51752

CAGE analysis