Hb_000049_070

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig49: 38341-43706
Sequence    

Annotation

kegg
ID rcu:RCOM_0542160
description Auxin-responsive protein IAA13, putative
nr
ID XP_012085222.1
description PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
swissprot
ID Q38829
description Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=1 SV=1
trembl
ID A0A067JRE7
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_17620 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa11 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45245: 38538-42373
cDNA
(Sanger)
(ID:Location)		 011_H23.ab1: 38538-42373 , 025_N13.ab1: 38538-42352

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_070 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
2 Hb_011287_090 0.0952485459 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
3 Hb_000236_250 0.1068312859 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007558_140 0.1072128616 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
5 Hb_011918_080 0.1192690939 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
6 Hb_000479_330 0.1204290554 - - PREDICTED: uncharacterized protein LOC105644113 isoform X1 [Jatropha curcas]
7 Hb_000898_040 0.1209069805 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_006935_050 0.1210772221 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
9 Hb_003195_060 0.1212863867 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
10 Hb_001085_170 0.1235921216 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
11 Hb_001051_100 0.1239564191 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
12 Hb_000436_070 0.1249503033 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
13 Hb_001433_220 0.1258769262 - - protein phosphatase, putative [Ricinus communis]
14 Hb_000836_630 0.1267678479 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
15 Hb_000207_250 0.1270221373 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
16 Hb_002307_100 0.1275214568 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
17 Hb_002874_070 0.1311565556 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
18 Hb_005754_060 0.1333969033 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000077_130 0.1340697575 - - PREDICTED: callose synthase 12 [Jatropha curcas]
20 Hb_002477_160 0.1343403769 - - hypothetical protein L484_013453 [Morus notabilis]

Gene co-expression network

sample Hb_000049_070 Hb_000049_070 Hb_011287_090 Hb_011287_090 Hb_000049_070--Hb_011287_090 Hb_000236_250 Hb_000236_250 Hb_000049_070--Hb_000236_250 Hb_007558_140 Hb_007558_140 Hb_000049_070--Hb_007558_140 Hb_011918_080 Hb_011918_080 Hb_000049_070--Hb_011918_080 Hb_000479_330 Hb_000479_330 Hb_000049_070--Hb_000479_330 Hb_000898_040 Hb_000898_040 Hb_000049_070--Hb_000898_040 Hb_002874_070 Hb_002874_070 Hb_011287_090--Hb_002874_070 Hb_000077_130 Hb_000077_130 Hb_011287_090--Hb_000077_130 Hb_000139_380 Hb_000139_380 Hb_011287_090--Hb_000139_380 Hb_011287_090--Hb_000236_250 Hb_006935_050 Hb_006935_050 Hb_011287_090--Hb_006935_050 Hb_001584_110 Hb_001584_110 Hb_000236_250--Hb_001584_110 Hb_014568_030 Hb_014568_030 Hb_000236_250--Hb_014568_030 Hb_005280_010 Hb_005280_010 Hb_000236_250--Hb_005280_010 Hb_002890_340 Hb_002890_340 Hb_000236_250--Hb_002890_340 Hb_185467_020 Hb_185467_020 Hb_000236_250--Hb_185467_020 Hb_001017_040 Hb_001017_040 Hb_000236_250--Hb_001017_040 Hb_007558_140--Hb_011918_080 Hb_002477_160 Hb_002477_160 Hb_007558_140--Hb_002477_160 Hb_002307_100 Hb_002307_100 Hb_007558_140--Hb_002307_100 Hb_001085_170 Hb_001085_170 Hb_007558_140--Hb_001085_170 Hb_153258_010 Hb_153258_010 Hb_007558_140--Hb_153258_010 Hb_000997_210 Hb_000997_210 Hb_007558_140--Hb_000997_210 Hb_011918_080--Hb_002477_160 Hb_015306_020 Hb_015306_020 Hb_011918_080--Hb_015306_020 Hb_000110_160 Hb_000110_160 Hb_011918_080--Hb_000110_160 Hb_004046_010 Hb_004046_010 Hb_011918_080--Hb_004046_010 Hb_001329_300 Hb_001329_300 Hb_011918_080--Hb_001329_300 Hb_002154_050 Hb_002154_050 Hb_000479_330--Hb_002154_050 Hb_003057_120 Hb_003057_120 Hb_000479_330--Hb_003057_120 Hb_000479_330--Hb_000110_160 Hb_000805_090 Hb_000805_090 Hb_000479_330--Hb_000805_090 Hb_001047_020 Hb_001047_020 Hb_000479_330--Hb_001047_020 Hb_000696_110 Hb_000696_110 Hb_000479_330--Hb_000696_110 Hb_000409_020 Hb_000409_020 Hb_000898_040--Hb_000409_020 Hb_002217_300 Hb_002217_300 Hb_000898_040--Hb_002217_300 Hb_000207_250 Hb_000207_250 Hb_000898_040--Hb_000207_250 Hb_000907_080 Hb_000907_080 Hb_000898_040--Hb_000907_080 Hb_004109_090 Hb_004109_090 Hb_000898_040--Hb_004109_090 Hb_000080_190 Hb_000080_190 Hb_000898_040--Hb_000080_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.4279 16.4721 13.8484 26.1233 61.7257 88.865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.8423 20.5833 102.884 21.401 13.919

CAGE analysis