Hb_000049_120

Information

Type -
Description -
Location Contig49: 89475-91235
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25790g
description POPTRDRAFT_799513; hypothetical protein
nr
ID XP_012085215.1
description PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
swissprot
ID Q7XJ98
description Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1
trembl
ID B9GRC8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s25790g PE=4 SV=1
Gene Ontology
ID GO:0005768
description xyloglucan galactosyltransferase katamari1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_120 0.0 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
2 Hb_061802_020 0.0860065462 - - zinc finger family protein [Populus trichocarpa]
3 Hb_004724_420 0.0985430612 - - fucose synthetase, putative [Ricinus communis]
4 Hb_000840_210 0.1003582215 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
5 Hb_001248_130 0.1020614152 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
6 Hb_000754_040 0.1050169754 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
7 Hb_093084_050 0.105811645 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
8 Hb_000614_230 0.1063045642 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
9 Hb_001195_690 0.1063198212 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
10 Hb_002006_090 0.108092151 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
11 Hb_000030_150 0.1083763206 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_003376_040 0.1101232901 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
13 Hb_003787_020 0.1112861579 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
14 Hb_001357_180 0.1115020873 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
15 Hb_000567_260 0.1126250091 - - BnaA09g41440D [Brassica napus]
16 Hb_000111_360 0.1128836173 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001051_100 0.1143243802 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
18 Hb_000174_070 0.1144503358 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
19 Hb_000705_210 0.1147372945 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
20 Hb_020178_070 0.1148382188 - - Protein Z, putative [Ricinus communis]

Gene co-expression network

sample Hb_000049_120 Hb_000049_120 Hb_061802_020 Hb_061802_020 Hb_000049_120--Hb_061802_020 Hb_004724_420 Hb_004724_420 Hb_000049_120--Hb_004724_420 Hb_000840_210 Hb_000840_210 Hb_000049_120--Hb_000840_210 Hb_001248_130 Hb_001248_130 Hb_000049_120--Hb_001248_130 Hb_000754_040 Hb_000754_040 Hb_000049_120--Hb_000754_040 Hb_093084_050 Hb_093084_050 Hb_000049_120--Hb_093084_050 Hb_000030_150 Hb_000030_150 Hb_061802_020--Hb_000030_150 Hb_006949_040 Hb_006949_040 Hb_061802_020--Hb_006949_040 Hb_001195_690 Hb_001195_690 Hb_061802_020--Hb_001195_690 Hb_001671_020 Hb_001671_020 Hb_061802_020--Hb_001671_020 Hb_020178_070 Hb_020178_070 Hb_061802_020--Hb_020178_070 Hb_183086_060 Hb_183086_060 Hb_004724_420--Hb_183086_060 Hb_004109_190 Hb_004109_190 Hb_004724_420--Hb_004109_190 Hb_000041_050 Hb_000041_050 Hb_004724_420--Hb_000041_050 Hb_000700_110 Hb_000700_110 Hb_004724_420--Hb_000700_110 Hb_000614_230 Hb_000614_230 Hb_004724_420--Hb_000614_230 Hb_005289_030 Hb_005289_030 Hb_004724_420--Hb_005289_030 Hb_002411_200 Hb_002411_200 Hb_000840_210--Hb_002411_200 Hb_000840_210--Hb_020178_070 Hb_001329_300 Hb_001329_300 Hb_000840_210--Hb_001329_300 Hb_000840_210--Hb_183086_060 Hb_071736_020 Hb_071736_020 Hb_000840_210--Hb_071736_020 Hb_000840_210--Hb_001248_130 Hb_001248_130--Hb_020178_070 Hb_000567_260 Hb_000567_260 Hb_001248_130--Hb_000567_260 Hb_189003_080 Hb_189003_080 Hb_001248_130--Hb_189003_080 Hb_007441_120 Hb_007441_120 Hb_001248_130--Hb_007441_120 Hb_000207_250 Hb_000207_250 Hb_001248_130--Hb_000207_250 Hb_002016_110 Hb_002016_110 Hb_001248_130--Hb_002016_110 Hb_000111_360 Hb_000111_360 Hb_000754_040--Hb_000111_360 Hb_006915_050 Hb_006915_050 Hb_000754_040--Hb_006915_050 Hb_008695_210 Hb_008695_210 Hb_000754_040--Hb_008695_210 Hb_001277_330 Hb_001277_330 Hb_000754_040--Hb_001277_330 Hb_055062_030 Hb_055062_030 Hb_000754_040--Hb_055062_030 Hb_000754_040--Hb_189003_080 Hb_000656_110 Hb_000656_110 Hb_093084_050--Hb_000656_110 Hb_001102_140 Hb_001102_140 Hb_093084_050--Hb_001102_140 Hb_001898_220 Hb_001898_220 Hb_093084_050--Hb_001898_220 Hb_003057_100 Hb_003057_100 Hb_093084_050--Hb_003057_100 Hb_093084_050--Hb_000041_050 Hb_000445_420 Hb_000445_420 Hb_093084_050--Hb_000445_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.1022 44.569 15.2322 49.3878 51.9107 67.8667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.635 56.7635 109.409 19.9869 23.4818

CAGE analysis