Hb_000049_130

Information

Type -
Description -
Location Contig49: 96669-97037
Sequence    

Annotation

kegg
ID vvi:104879855
description uncharacterized LOC104879855
nr
ID XP_010652556.1
description PREDICTED: uncharacterized protein LOC104879855 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID K7KFJ6
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45260: 97633-102368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_130 0.0 - - PREDICTED: uncharacterized protein LOC104879855 [Vitis vinifera]
2 Hb_181838_010 0.1948952224 - - PREDICTED: uncharacterized protein LOC105631275 [Jatropha curcas]
3 Hb_001814_060 0.2135927994 - - PREDICTED: uncharacterized protein LOC105650637 [Jatropha curcas]
4 Hb_001221_200 0.2207131167 - - -
5 Hb_000350_030 0.2398344559 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
6 Hb_006693_040 0.2407604094 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
7 Hb_000556_010 0.2464850387 - - glycerate dehydrogenase, putative [Ricinus communis]
8 Hb_004088_050 0.249042143 - - hypothetical protein VITISV_027174 [Vitis vinifera]
9 Hb_003371_050 0.2518337529 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000422_070 0.252416703 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001163_020 0.2538594701 desease resistance Gene Name: ABC_trans_N ATP-binding cassette transporter, putative [Ricinus communis]
12 Hb_000608_150 0.2550755125 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
13 Hb_008206_090 0.258448335 - - PREDICTED: uncharacterized protein LOC100811033 [Glycine max]
14 Hb_007192_020 0.2672476865 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
15 Hb_002305_010 0.2674556698 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
16 Hb_002182_020 0.2690179972 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_145745_040 0.2709617032 - - Cell wall-associated hydrolase [Medicago truncatula]
18 Hb_006978_020 0.2721032071 - - PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_033683_010 0.2721287168 - - myo inositol monophosphatase, putative [Ricinus communis]
20 Hb_000189_440 0.2742271744 - - hypothetical protein JCGZ_23470 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_130 Hb_000049_130 Hb_181838_010 Hb_181838_010 Hb_000049_130--Hb_181838_010 Hb_001814_060 Hb_001814_060 Hb_000049_130--Hb_001814_060 Hb_001221_200 Hb_001221_200 Hb_000049_130--Hb_001221_200 Hb_000350_030 Hb_000350_030 Hb_000049_130--Hb_000350_030 Hb_006693_040 Hb_006693_040 Hb_000049_130--Hb_006693_040 Hb_000556_010 Hb_000556_010 Hb_000049_130--Hb_000556_010 Hb_181838_010--Hb_000350_030 Hb_001163_020 Hb_001163_020 Hb_181838_010--Hb_001163_020 Hb_001348_090 Hb_001348_090 Hb_181838_010--Hb_001348_090 Hb_181838_010--Hb_001221_200 Hb_004242_170 Hb_004242_170 Hb_181838_010--Hb_004242_170 Hb_001793_050 Hb_001793_050 Hb_181838_010--Hb_001793_050 Hb_000915_190 Hb_000915_190 Hb_001814_060--Hb_000915_190 Hb_000363_450 Hb_000363_450 Hb_001814_060--Hb_000363_450 Hb_000445_160 Hb_000445_160 Hb_001814_060--Hb_000445_160 Hb_000483_320 Hb_000483_320 Hb_001814_060--Hb_000483_320 Hb_128750_010 Hb_128750_010 Hb_001814_060--Hb_128750_010 Hb_000866_340 Hb_000866_340 Hb_001221_200--Hb_000866_340 Hb_001221_190 Hb_001221_190 Hb_001221_200--Hb_001221_190 Hb_000977_290 Hb_000977_290 Hb_001221_200--Hb_000977_290 Hb_000261_400 Hb_000261_400 Hb_001221_200--Hb_000261_400 Hb_005063_080 Hb_005063_080 Hb_001221_200--Hb_005063_080 Hb_000347_190 Hb_000347_190 Hb_000350_030--Hb_000347_190 Hb_001677_040 Hb_001677_040 Hb_000350_030--Hb_001677_040 Hb_032631_020 Hb_032631_020 Hb_000350_030--Hb_032631_020 Hb_000056_110 Hb_000056_110 Hb_000350_030--Hb_000056_110 Hb_105033_010 Hb_105033_010 Hb_000350_030--Hb_105033_010 Hb_006693_040--Hb_000556_010 Hb_001819_020 Hb_001819_020 Hb_006693_040--Hb_001819_020 Hb_001584_280 Hb_001584_280 Hb_006693_040--Hb_001584_280 Hb_000193_210 Hb_000193_210 Hb_006693_040--Hb_000193_210 Hb_000856_400 Hb_000856_400 Hb_006693_040--Hb_000856_400 Hb_020805_040 Hb_020805_040 Hb_006693_040--Hb_020805_040 Hb_001004_080 Hb_001004_080 Hb_000556_010--Hb_001004_080 Hb_000556_010--Hb_000193_210 Hb_002182_020 Hb_002182_020 Hb_000556_010--Hb_002182_020 Hb_011310_040 Hb_011310_040 Hb_000556_010--Hb_011310_040 Hb_000556_010--Hb_000856_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0872779 1.64541 1.97855 0 1.41094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.233896 0.183761 0 0.320819 2.195

CAGE analysis