Hb_000049_140

Information

Type -
Description -
Location Contig49: 98047-102439
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25720g
description POPTRDRAFT_645558; hypothetical protein
nr
ID XP_012085214.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
swissprot
ID Q9SK66
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=1 SV=2
trembl
ID A0A067K2F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17613 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45260: 97633-102368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_140 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
2 Hb_000875_080 0.0618554488 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
3 Hb_005144_090 0.0664396303 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
4 Hb_000336_210 0.0727855848 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
5 Hb_004453_130 0.0741518285 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
6 Hb_011618_050 0.0741965931 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
7 Hb_000297_160 0.0777156689 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
8 Hb_002272_050 0.078112219 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
9 Hb_123915_040 0.0799918671 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
10 Hb_000260_630 0.0815686619 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
11 Hb_000816_250 0.0832215595 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
12 Hb_002163_050 0.0840330976 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
13 Hb_000245_220 0.0856307639 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
14 Hb_000317_470 0.0862182124 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
15 Hb_014834_150 0.0866533192 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_002820_050 0.0879743257 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
17 Hb_001472_100 0.0888675981 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
18 Hb_000649_230 0.0901191872 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
19 Hb_000905_110 0.0906038952 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
20 Hb_000417_130 0.0922336449 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_140 Hb_000049_140 Hb_000875_080 Hb_000875_080 Hb_000049_140--Hb_000875_080 Hb_005144_090 Hb_005144_090 Hb_000049_140--Hb_005144_090 Hb_000336_210 Hb_000336_210 Hb_000049_140--Hb_000336_210 Hb_004453_130 Hb_004453_130 Hb_000049_140--Hb_004453_130 Hb_011618_050 Hb_011618_050 Hb_000049_140--Hb_011618_050 Hb_000297_160 Hb_000297_160 Hb_000049_140--Hb_000297_160 Hb_000875_080--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000875_080--Hb_002272_050 Hb_000875_080--Hb_000297_160 Hb_005271_040 Hb_005271_040 Hb_000875_080--Hb_005271_040 Hb_171900_090 Hb_171900_090 Hb_000875_080--Hb_171900_090 Hb_005144_090--Hb_011618_050 Hb_000417_130 Hb_000417_130 Hb_005144_090--Hb_000417_130 Hb_005144_090--Hb_000297_160 Hb_002013_020 Hb_002013_020 Hb_005144_090--Hb_002013_020 Hb_123915_040 Hb_123915_040 Hb_005144_090--Hb_123915_040 Hb_000905_110 Hb_000905_110 Hb_000336_210--Hb_000905_110 Hb_014834_150 Hb_014834_150 Hb_000336_210--Hb_014834_150 Hb_000336_210--Hb_002272_050 Hb_000336_210--Hb_171900_090 Hb_000336_210--Hb_000297_160 Hb_002820_050 Hb_002820_050 Hb_004453_130--Hb_002820_050 Hb_005730_120 Hb_005730_120 Hb_004453_130--Hb_005730_120 Hb_001599_040 Hb_001599_040 Hb_004453_130--Hb_001599_040 Hb_005271_220 Hb_005271_220 Hb_004453_130--Hb_005271_220 Hb_007423_040 Hb_007423_040 Hb_004453_130--Hb_007423_040 Hb_000046_040 Hb_000046_040 Hb_011618_050--Hb_000046_040 Hb_000649_230 Hb_000649_230 Hb_011618_050--Hb_000649_230 Hb_000751_030 Hb_000751_030 Hb_011618_050--Hb_000751_030 Hb_000245_220 Hb_000245_220 Hb_011618_050--Hb_000245_220 Hb_000270_680 Hb_000270_680 Hb_000297_160--Hb_000270_680 Hb_001959_110 Hb_001959_110 Hb_000297_160--Hb_001959_110 Hb_000297_160--Hb_002272_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0101 9.78345 24.1582 15.7455 20.8689 11.8518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1284 18.4457 10.0723 15.2906 12.6797

CAGE analysis